RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 KCMF1Q9P0J7 381 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 FOCADQ5VW36 1801 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 UNC119BA6NIH7 251 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 FAM183AA6NL82 134 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 M0R082 166 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 FURINP09958 794 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 GKN3PP0CG01 181 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 PODNL1Q6PEZ8 512 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 OR51L1Q8NGJ5 315 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 SLC25A46Q96AG3 418 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 KLHL9Q9P2J3 617 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 GFYI3L273 518 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 GP1BBP13224 206 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 F3P13726 295 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 GABRA5P31644 462 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 AIMP2Q13155 320 aaKnown RBP15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 GK2Q14410 553 aaPredicted RBP15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 BAIAP2L2Q6UXY1 529 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 ZNF680Q8NEM1 530 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 SEC61A2Q9H9S3 476 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 CD207Q9UJ71 328 aa15.25■□□□□ 0.03
CCDC88B-209ENST00000494080 GPR89AB7ZAQ6 455 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 PRAMEF26H0Y7S4 382 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 SOX1O00570 391 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 GPR89BP0CG08 455 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 MAP3K8P41279 467 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 HNRNPKP61978 463 aaKnown RBP eCLIP15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 KIR2DS3Q14952 304 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 KLHL26Q53HC5 615 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 ALG10BQ5I7T1 473 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 PAQR6Q6TCH4 344 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 OLIG3Q7RTU3 272 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 C12orf40Q86WS4 652 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 TMPRSS12Q86WS5 348 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 SLC38A6Q8IZM9 456 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 GAL3ST3Q96A11 431 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 CPNE7Q9UBL6 633 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 RGS13O14921 159 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 AHSA1O95433 338 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 EIF1AXP47813 144 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 RAB5BP61020 215 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 DEFB133Q30KQ1 61 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 CLVS2Q5SYC1 327 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 EIF5AL1Q6IS14 154 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 CYB561A3Q8NBI2 242 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 TMEM185AQ8NFB2 350 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 HCAR2Q8TDS4 363 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 SLC41A3Q96GZ6 507 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 MS4A4EQ96PG1 132 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 POLDIP3Q9BY77 421 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 SRRQ9GZT4 340 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 CXorf36Q9H7Y0 433 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 ATAD5Q96QE3 1844 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 A0A0G2JMP0 313 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 SLC22A31A6NKX4 558 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 KRBOX1C9JBD0 128 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 DBIP07108 87 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 ZNF14P17017 642 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 NUDT1P36639 197 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 PTH2RP49190 550 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 EIF5AP63241 154 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 LRIF1Q5T3J3 769 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 QSOX2Q6ZRP7 698 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 OR4M2Q8NGB6 313 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 ANGPTL6Q8NI99 470 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 CREB3L4Q8TEY5 395 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 SLC38A5Q8WUX1 472 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 KIAA1143Q96AT1 154 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 SAMD8Q96LT4 415 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 G6PC3Q9BUM1 346 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 ZNF416Q9BWM5 594 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 GRHPRQ9UBQ7 328 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 ERVK-19Q9WJR5 959 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 MN1Q10571 1320 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 F8W036 122 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 FARS2O95363 451 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 TCRBP04435 133 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 ARAFP10398 606 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 TPMTP51580 245 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 KIAA1024LP59773 190 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 BLOC1S1P78537 153 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 MC2RQ01718 297 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 NFATC4Q14934 902 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 EXOSC7Q15024 291 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 ZSCAN1Q8NBB4 408 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 CDS1Q92903 461 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 SERINC2Q96SA4 455 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 C1QTNF3Q9BXJ4 246 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 DPH1Q9BZG8 443 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 PLEKHA1Q9HB21 404 aa15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 SRA1Q9HD15 236 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-209ENST00000494080 SLC9B1P1A6NJY1 282 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 ACP2P11117 423 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 KIR2DL3P43628 341 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 ETV1P50549 477 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 METAP1P53582 386 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 ZNF227Q86WZ6 799 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 C16orf58Q96GQ5 468 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 GABARAPL1Q9H0R8 117 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 NAALAD2Q9Y3Q0 740 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms