RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 ZNF24P17028 368 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 GGT1P19440 569 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 PIGAP37287 484 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 MAP3K8P41279 467 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 MLF1P58340 268 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 FUT5Q11128 374 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 FLOT2Q14254 428 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 ADRM1Q16186 407 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 ARHGAP11BQ3KRB8 267 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 C1orf146Q5VVC0 180 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 HEPHL1Q6MZM0 1159 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 SPNS3Q6ZMD2 512 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 C16orf47Q6ZP98 133 aaPredicted RBP11.09□□□□□ -0.63
UPF3A-210ENST00000493727 LRRC74BQ6ZQY2 392 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 REC114Q7Z4M0 266 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 GALNT10Q86SR1 603 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 KRT73Q86Y46 540 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 ZNF441Q8N8Z8 693 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 CHDHQ8NE62 594 aaPredicted RBP11.09□□□□□ -0.63
UPF3A-210ENST00000493727 SLC26A7Q8TE54 656 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 HOXB13Q92826 284 aaPredicted RBP11.09□□□□□ -0.63
UPF3A-210ENST00000493727 EFHD2Q96C19 240 aaPredicted RBP11.09□□□□□ -0.63
UPF3A-210ENST00000493727 ASB9Q96DX5 294 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 OMA1Q96E52 524 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 ZNF607Q96SK3 696 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 PCDHAC1Q9H158 963 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 MYOTQ9UBF9 498 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 SLC7A8Q9UHI5 535 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 TINAGQ9UJW2 476 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 ADAM30Q9UKF2 790 aa11.09□□□□□ -0.63
UPF3A-210ENST00000493727 KLF13Q9Y2Y9 288 aaPredicted RBP11.09□□□□□ -0.63
UPF3A-210ENST00000493727 ANKHD1Q8IWZ3 2542 aaKnown RBP11.08□□□□□ -0.64
UPF3A-210ENST00000493727 ZNF407Q9C0G0 2248 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 PRRG2O14669 202 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 ARPC2O15144 300 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 TO15178 435 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 ITGA10O75578 1167 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 OR2J2O76002 312 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 ABCD3P28288 659 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 TMED10P49755 219 aaKnown RBP11.08□□□□□ -0.64
UPF3A-210ENST00000493727 HLCSP50747 726 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 KRTAP10-9P60411 292 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 ADORA2A-AS1P86434 159 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 VEZF1Q14119 521 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 TRIM25Q14258 630 aaKnown RBP11.08□□□□□ -0.64
UPF3A-210ENST00000493727 FLYWCH1Q4VC44 716 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 PRAMEF8Q5VWM4 474 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 PRAMEF7Q5VXH5 474 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 GLYATQ6IB77 296 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 PGM2L1Q6PCE3 622 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 OLIG3Q7RTU3 272 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.08□□□□□ -0.64
UPF3A-210ENST00000493727 PATL1Q86TB9 770 aaKnown RBP11.08□□□□□ -0.64
UPF3A-210ENST00000493727 DHFR2Q86XF0 187 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 SIAH3Q8IW03 269 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 MRPL41Q8IXM3 137 aaKnown RBP11.08□□□□□ -0.64
UPF3A-210ENST00000493727 Q8N3U1 123 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 TMEM156Q8N614 296 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 SPPL2AQ8TCT8 520 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 PHF10Q8WUB8 498 aaKnown RBP11.08□□□□□ -0.64
UPF3A-210ENST00000493727 ASB15Q8WXK1 588 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 NSMCE2Q96MF7 247 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 SDF2Q99470 211 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 TREX2Q9BQ50 279 aaPredicted RBP11.08□□□□□ -0.64
UPF3A-210ENST00000493727 HES7Q9BYE0 225 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 ZNF350Q9GZX5 532 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 POLE3Q9NRF9 147 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 ITGB1BP2Q9UKP3 347 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 MKLN1Q9UL63 735 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 POMPQ9Y244 141 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 MEMO1Q9Y316 297 aa11.08□□□□□ -0.64
UPF3A-210ENST00000493727 INTS1Q8N201 2190 aaKnown RBP11.08□□□□□ -0.64
UPF3A-210ENST00000493727 PHF3Q92576 2039 aaKnown RBP11.08□□□□□ -0.64
UPF3A-210ENST00000493727 NIPBLQ6KC79 2804 aaeCLIP11.07□□□□□ -0.64
UPF3A-210ENST00000493727 A0A0G2JPF8 293 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 SCO2A0A1W2PP80 73 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 HNRNPCL2B2RXH8 293 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 HNRNPCL3B7ZW38 293 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 E9PLN8 166 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 KLRC4-KLRK1H3BQV0 150 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 C19orf84I3L1E1 186 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 SERPINB7O75635 380 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 PPM1BO75688 479 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 PGM3O95394 542 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 CLDN14O95500 239 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 IL33O95760 270 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 IFNA14P01570 189 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 HNRNPCL4P0DMR1 293 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 HPGDP15428 266 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 SSR4P51571 173 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 CHRNEQ04844 493 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 TRAP1Q12931 704 aaKnown RBP11.07□□□□□ -0.64
UPF3A-210ENST00000493727 EFR3AQ14156 821 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 CDSNQ15517 529 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 GPR68Q15743 365 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.07□□□□□ -0.64
UPF3A-210ENST00000493727 MSMPQ1L6U9 139 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 OPN5Q6U736 354 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 CYP2R1Q6VVX0 501 aa11.07□□□□□ -0.64
UPF3A-210ENST00000493727 FRRS1Q6ZNA5 592 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms