RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 ASCC2Q9H1I8 757 aaPredicted RBP3.88□□□□□ -1.79
BRCA1-220ENST00000492859 PPA2Q9H2U2 334 aa3.88□□□□□ -1.79
BRCA1-220ENST00000492859 TMBIM4Q9HC24 238 aa3.88□□□□□ -1.79
BRCA1-220ENST00000492859 EML4Q9HC35 981 aaKnown RBP3.88□□□□□ -1.79
BRCA1-220ENST00000492859 SLC6A20Q9NP91 592 aa3.88□□□□□ -1.79
BRCA1-220ENST00000492859 POLE4Q9NR33 117 aa3.88□□□□□ -1.79
BRCA1-220ENST00000492859 MRPL17Q9NRX2 175 aaKnown RBP3.88□□□□□ -1.79
BRCA1-220ENST00000492859 BABAM1Q9NWV8 329 aa3.88□□□□□ -1.79
BRCA1-220ENST00000492859 TAS2R14Q9NYV8 317 aa3.88□□□□□ -1.79
BRCA1-220ENST00000492859 P2RX2Q9UBL9 471 aa3.88□□□□□ -1.79
BRCA1-220ENST00000492859 MIOXQ9UGB7 285 aa3.88□□□□□ -1.79
BRCA1-220ENST00000492859 NAGPAQ9UK23 515 aa3.88□□□□□ -1.79
BRCA1-220ENST00000492859 SLC45A2Q9UMX9 530 aa3.88□□□□□ -1.79
BRCA1-220ENST00000492859 MAP3K2Q9Y2U5 619 aa3.88□□□□□ -1.79
BRCA1-220ENST00000492859 MAGI1Q96QZ7 1491 aaPredicted RBP3.88□□□□□ -1.79
BRCA1-220ENST00000492859 IFT140Q96RY7 1462 aa3.88□□□□□ -1.79
BRCA1-220ENST00000492859 CPSF1Q10570 1443 aaKnown RBP3.88□□□□□ -1.79
BRCA1-220ENST00000492859 MIA2Q96PC5 1412 aa3.88□□□□□ -1.79
BRCA1-220ENST00000492859 DHX57Q6P158 1386 aaKnown RBP3.87□□□□□ -1.79
BRCA1-220ENST00000492859 LOC105371242A0A075B767 164 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 A0A1B0GVI7 797 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 A0A1W2PPE3 182 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 RNF222A6NCQ9 220 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 PROB1E7EW31 1015 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 SLC16A4O15374 487 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 SRGAP3O43295 1099 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 DCNP07585 359 aaKnown RBP3.87□□□□□ -1.79
BRCA1-220ENST00000492859 HTR1AP08908 422 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 HOXC4P09017 264 aaPredicted RBP3.87□□□□□ -1.79
BRCA1-220ENST00000492859 ATP1B2P14415 290 aaPredicted RBP3.87□□□□□ -1.79
BRCA1-220ENST00000492859 DPEP1P16444 411 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 CSNK2A2P19784 350 aaPredicted RBP3.87□□□□□ -1.79
BRCA1-220ENST00000492859 ITGB7P26010 798 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 SSTR5P35346 364 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 ARR3P36575 388 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 MATKP42679 507 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 GNPDA1P46926 289 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 SOX2P48431 317 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 CSNK1A1P48729 337 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 PDLIM4P50479 330 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 SNAP25P60880 206 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 RAP1BP61224 184 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 TPBGQ13641 420 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 ITGA9Q13797 1035 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 TFDP2Q14188 446 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 MPPED2Q15777 294 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 SYPL1Q16563 259 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 PGGHGQ32M88 737 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 FAM174BQ3ZCQ3 159 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 ACSM3Q53FZ2 586 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 ESCO2Q56NI9 601 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 NKAPLQ5M9Q1 402 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 LCE1DQ5T752 114 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 SYT6Q5T7P8 510 aaPredicted RBP3.87□□□□□ -1.79
BRCA1-220ENST00000492859 SUSD4Q5VX71 490 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 OR8G2PQ6IF36 304 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 FAM45BPQ6NSW5 357 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 DHRS4L2Q6PKH6 230 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 MBOAT1Q6ZNC8 495 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 GCNT7Q6ZNI0 430 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 ZNF621Q6ZSS3 439 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 CPEB2Q7Z5Q1 589 aaKnown RBP3.87□□□□□ -1.79
BRCA1-220ENST00000492859 TBC1D26Q86UD7 250 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 GPAT4Q86UL3 456 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 ZC3HC1Q86WB0 502 aaKnown RBP3.87□□□□□ -1.79
BRCA1-220ENST00000492859 ANGPTL5Q86XS5 388 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 ADGRG3Q86Y34 549 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 Q8N1Y9 231 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 TMEM251Q8N6I4 163 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 ZNF655Q8N720 491 aaPredicted RBP3.87□□□□□ -1.79
BRCA1-220ENST00000492859 FAM46DQ8NEK8 389 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 OR1L6Q8NGR2 347 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 OR13D1Q8NGV5 346 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 OR10K1Q8NGX5 313 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 SLC35B2Q8TB61 432 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 ZNF398Q8TD17 642 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 RNF141Q8WVD5 230 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 TMEM234Q8WY98 164 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 NR4A3Q92570 626 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 WDR34Q96EX3 536 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 SH3YL1Q96HL8 342 aaPredicted RBP3.87□□□□□ -1.79
BRCA1-220ENST00000492859 OR5M11Q96RB7 305 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 KCNA7Q96RP8 456 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 ECSITQ9BQ95 431 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 WDR77Q9BQA1 342 aaPredicted RBP3.87□□□□□ -1.79
BRCA1-220ENST00000492859 AIF1LQ9BQI0 150 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 NDUFAF3Q9BU61 184 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 PTDSS2Q9BVG9 487 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 MND1Q9BWT6 205 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 KRTAP4-2Q9BYR5 136 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 SLC39A8Q9C0K1 460 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 FAM124BQ9H5Z6 455 aaPredicted RBP3.87□□□□□ -1.79
BRCA1-220ENST00000492859 SLA2Q9H6Q3 261 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 DCLRE1BQ9H816 532 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 NT5DC2Q9H857 520 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 IL1RL2Q9HB29 575 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 Q9N2K0 584 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 SLC22A11Q9NSA0 550 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 MAT2BQ9NZL9 334 aa3.87□□□□□ -1.79
BRCA1-220ENST00000492859 FTSJ1Q9UET6 329 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms