RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	LRIF1	Q5T3J3	769 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	C1orf185	Q5T7R7	199 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	7.94	□□□□□ -1.14
USP4-213	ENST00000488520	C16orf89	Q6UX73	402 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	RTL4	Q6ZR62	310 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	TRIL	Q7L0X0	811 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	ARPIN	Q7Z6K5	226 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	SLC22A16	Q86VW1	577 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	PRR22	Q8IZ63	422 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	TMEM251	Q8N6I4	163 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	FITM2	Q8N6M3	262 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	ZNF527	Q8NB42	609 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	SLC16A11	Q8NCK7	471 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	SIMC1	Q8NDZ2	872 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	WFDC11	Q8NEX6	87 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	FBXO30	Q8TB52	745 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	PIK3R3	Q92569	461 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	DIO2	Q92813	273 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	TMBIM1	Q969X1	311 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	RCN3	Q96D15	328 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	OMA1	Q96E52	524 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	DTNBP1	Q96EV8	351 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	SLC35A4	Q96G79	324 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	VSTM2L	Q96N03	204 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	ANKRD27	Q96NW4	1050 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	COL21A1	Q96P44	957 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	BTBD9	Q96Q07	612 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	ALPK1	Q96QP1	1244 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	ADO	Q96SZ5	270 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	ZDHHC11	Q9H8X9	412 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	SERHL	Q9NQF3	203 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	SACM1L	Q9NTJ5	587 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	GPATCH2	Q9NW75	528 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	CNIH4	Q9P003	139 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	FBN3	Q75N90	2809 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	CSPG4	Q6UVK1	2322 aa		7.94	□□□□□ -1.14
USP4-213	ENST00000488520	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	OR6C70	A6NIJ9	312 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520		A6NNC1	897 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520		B2RBV5	119 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	GTPBP1	O00178	669 aa	Known RBP	7.93	□□□□□ -1.14
USP4-213	ENST00000488520	EBAG9	O00559	213 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	FBP2	O00757	339 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	SCD	O00767	359 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	GSTA4	O15217	222 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	NME6	O75414	186 aa	Predicted RBP	7.93	□□□□□ -1.14
USP4-213	ENST00000488520	STX11	O75558	287 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	IL33	O95760	270 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	ACP2	P11117	423 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	ENDOU	P21128	410 aa	Known RBP	7.93	□□□□□ -1.14
USP4-213	ENST00000488520	CNR1	P21554	472 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	CALB2	P22676	271 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	SLC6A2	P23975	617 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	LCN1	P31025	176 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	PIGA	P37287	484 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	MAN2A2	P49641	1150 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	CORO7	P57737	925 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	RGN	Q15493	299 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	DUSP5	Q16690	384 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	CYP51A1	Q16850	503 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	ARHGAP11B	Q3KRB8	267 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	FLYWCH1	Q4VC44	716 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	DCST2	Q5T1A1	773 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	WLS	Q5T9L3	541 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	NANOGP8	Q6NSW7	305 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	DLEU7	Q6UYE1	221 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	BIVM	Q86UB2	503 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	TNIP2	Q8NFZ5	429 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	OR5D16	Q8NGK9	328 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	MIPOL1	Q8TD10	442 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	SLC26A7	Q8TE54	656 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	PMM1	Q92871	262 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	CDS1	Q92903	461 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	SPACA9	Q96E40	222 aa	Predicted RBP	7.93	□□□□□ -1.14
USP4-213	ENST00000488520	GIMAP5	Q96F15	307 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	SECISBP2	Q96T21	854 aa	Known RBP	7.93	□□□□□ -1.14
USP4-213	ENST00000488520	SPATA5L1	Q9BVQ7	753 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	TBL1XR1	Q9BZK7	514 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	ARMC7	Q9H6L4	198 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	METTL7A	Q9H8H3	244 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	MTHFD2L	Q9H903	347 aa	Predicted RBP	7.93	□□□□□ -1.14
USP4-213	ENST00000488520	NANOG	Q9H9S0	305 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	SLC52A3	Q9NQ40	469 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	TUBA8	Q9NY65	449 aa	Predicted RBP	7.93	□□□□□ -1.14
USP4-213	ENST00000488520	ADA2	Q9NZK5	511 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	KLRF1	Q9NZS2	232 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	VAPA	Q9P0L0	249 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	SLAMF8	Q9P0V8	285 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	P2RX2	Q9UBL9	471 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	EDAR	Q9UNE0	448 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	DTX4	Q9Y2E6	619 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520	ZAN	Q9Y493	2812 aa		7.93	□□□□□ -1.14
USP4-213	ENST00000488520		A0A0G2JPF8	293 aa		7.92	□□□□□ -1.14
USP4-213	ENST00000488520	GXYLT2	A0PJZ3	443 aa		7.92	□□□□□ -1.14
USP4-213	ENST00000488520	OR14I1	A6ND48	311 aa		7.92	□□□□□ -1.14
USP4-213	ENST00000488520	HNRNPCL2	B2RXH8	293 aa		7.92	□□□□□ -1.14
USP4-213	ENST00000488520	HNRNPCL3	B7ZW38	293 aa		7.92	□□□□□ -1.14
USP4-213	ENST00000488520	ZNF354A	O60765	605 aa	Predicted RBP	7.92	□□□□□ -1.14
USP4-213	ENST00000488520	HNRNPCL1	O60812	293 aa	Known RBP	7.92	□□□□□ -1.14
USP4-213	ENST00000488520	WDR1	O75083	606 aa		7.92	□□□□□ -1.14

Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms