RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 NPIPA8P0DM63 369 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 CPN1P15169 458 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 RPS4Y1P22090 263 aaKnown RBP7.5□□□□□ -1.21
SF3A1-208ENST00000485618 ELK4P28324 431 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 AQP1P29972 269 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 RYKP34925 604 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 PGM1P36871 562 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 APOBEC1P41238 236 aaKnown RBP7.5□□□□□ -1.21
SF3A1-208ENST00000485618 SLC1A3P43003 542 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 CLK1P49759 484 aaKnown RBP7.5□□□□□ -1.21
SF3A1-208ENST00000485618 SLC7A2P52569 658 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 SMSP52788 366 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 ZNF117Q03924 483 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 FUT5Q11128 374 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 MAPK14Q16539 360 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 EIF2S3LQ2VIR3 472 aaKnown RBP7.5□□□□□ -1.21
SF3A1-208ENST00000485618 GXYLT1Q4G148 440 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 DNAL1Q4LDG9 190 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 WIPI1Q5MNZ9 446 aaPredicted RBP7.5□□□□□ -1.21
SF3A1-208ENST00000485618 MRPL2Q5T653 305 aaKnown RBP7.5□□□□□ -1.21
SF3A1-208ENST00000485618 FNDC7Q5VTL7 733 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 ZNF787Q6DD87 383 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 GTF2IRD2BQ6EKJ0 949 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 VASNQ6EMK4 673 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 DHRS4L2Q6PKH6 230 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 CCDC80Q76M96 950 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 MAMDC2Q7Z304 686 aaPredicted RBP7.5□□□□□ -1.21
SF3A1-208ENST00000485618 GTF2IRD2Q86UP8 949 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 CALHM3Q86XJ0 350 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 ZGRF1Q86YA3 2104 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 SLC15A3Q8IY34 581 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 MICU2Q8IYU8 434 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 GTPBP8Q8N3Z3 284 aaPredicted RBP7.5□□□□□ -1.21
SF3A1-208ENST00000485618 FAM57AQ8TBR7 257 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 GPR119Q8TDV5 335 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 SLC25A43Q8WUT9 341 aaPredicted RBP7.5□□□□□ -1.21
SF3A1-208ENST00000485618 ZG16BQ96DA0 208 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 TIMP4Q99727 224 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 ZNF559Q9BR84 538 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 TRIM2Q9C040 744 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 ALG2Q9H553 416 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 IKZF5Q9H5V7 419 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 PIF1Q9H611 641 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 TMEM27Q9HBJ8 222 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 ACER3Q9NUN7 267 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 ARL8BQ9NVJ2 186 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 ALKBH4Q9NXW9 302 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 TMEM181Q9P2C4 612 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 RPS6KA6Q9UK32 745 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 ICAM5Q9UMF0 924 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 PRPF19Q9UMS4 504 aaKnown RBP7.5□□□□□ -1.21
SF3A1-208ENST00000485618 CAMK2AQ9UQM7 478 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 VDAC3Q9Y277 283 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 RPH3AQ9Y2J0 694 aaPredicted RBP7.5□□□□□ -1.21
SF3A1-208ENST00000485618 USP9YO00507 2555 aaPredicted RBP7.5□□□□□ -1.21
SF3A1-208ENST00000485618 FLNCQ14315 2725 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 EML6Q6ZMW3 1958 aa7.5□□□□□ -1.21
SF3A1-208ENST00000485618 TNFSF12-TNFSF13A0A0A6YY99 330 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 OR2M5A3KFT3 312 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 PRAMEF27A3QJZ7 478 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 H0Y3Z8 333 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 SYT5O00445 386 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 EBAG9O00559 213 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 AP3D1O14617 1153 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 GMFGO60234 142 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 PNMTP11086 282 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 CD1EP15812 388 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 HOXB6P17509 224 aaKnown RBP7.49□□□□□ -1.21
SF3A1-208ENST00000485618 BMP7P18075 431 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 CXCR1P25024 350 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 ACVR2AP27037 513 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 COL8A1P27658 744 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 SLC7A1P30825 629 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 KDELR2P33947 212 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 CPA2P48052 419 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 IDH2P48735 452 aaKnown RBP7.49□□□□□ -1.21
SF3A1-208ENST00000485618 POLR2HP52434 150 aaKnown RBP7.49□□□□□ -1.21
SF3A1-208ENST00000485618 RAC1P63000 192 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 MERTKQ12866 999 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 BNIP2Q12982 314 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 SKP2Q13309 424 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 QPRTQ15274 297 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 CD226Q15762 336 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 PLPPR5Q32ZL2 321 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 RPS26P11Q5JNZ5 115 aaPredicted RBP7.49□□□□□ -1.21
SF3A1-208ENST00000485618 WBP2NLQ6ICG8 309 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 ZNF585AQ6P3V2 769 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 RPTNQ6XPR3 784 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 Q6ZPB1 254 aaPredicted RBP7.49□□□□□ -1.21
SF3A1-208ENST00000485618 ESPNLQ6ZVH7 1005 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 GRINAQ7Z429 371 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 VRK2Q86Y07 508 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 PTOV1Q86YD1 416 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 ZZZ3Q8IYH5 903 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 DEFB107AQ8IZN7 70 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 LILRA2Q8N149 483 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 ZPLD1Q8TCW7 415 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 DNAJA4Q8WW22 397 aaPredicted RBP7.49□□□□□ -1.21
SF3A1-208ENST00000485618 FAM162AQ96A26 154 aa7.49□□□□□ -1.21
SF3A1-208ENST00000485618 ZHX1-C8orf76Q96EF9 292 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms