RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 C17orf67Q0P5P2 114 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 MAD2L1Q13257 205 aaPredicted RBP6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 SNTB1Q13884 538 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 MLC1Q15049 377 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 GRAMD1BQ3KR37 738 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 KRT71Q3SY84 523 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 GLYR1Q49A26 553 aaPredicted RBP6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 FLYWCH1Q4VC44 716 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 FBXW10Q5XX13 1052 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 MFSD12Q6NUT3 480 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 P4HA3Q7Z4N8 544 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 MARCH3Q86UD3 253 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 NUDCD3Q8IVD9 361 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 ZZZ3Q8IYH5 903 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 NATD1Q8N6N6 113 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 FNDC5Q8NAU1 212 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 OR7A2PQ8NGA2 310 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 OR6Y1Q8NGX8 325 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 DUSP19Q8WTR2 217 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 FAM222BQ8WU58 562 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 PIK3R3Q92569 461 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 SLC9A6Q92581 669 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 JADE3Q92613 823 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 INTS12Q96CB8 462 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 TUBGCP3Q96CW5 907 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 C1GALT1C1Q96EU7 318 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 GIMAP5Q96F15 307 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 C3orf30Q96M34 536 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 PRPF18Q99633 342 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 POLDIP3Q9BY77 421 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 PARD6BQ9BYG5 372 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 RTN4RQ9BZR6 473 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 PIGMQ9H3S5 423 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 ZCCHC3Q9NUD5 404 aaKnown RBP6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 JKAMPQ9P055 326 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 CLCF1Q9UBD9 225 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 ZDHHC2Q9UIJ5 367 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 SNX8Q9Y5X2 465 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 AKAP6Q13023 2319 aa6.13□□□□□ -1.43
CCDC88A-213ENST00000476903 IGLV3-32A0A0A0MS00 114 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 A0A1W2PRB8 838 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 SLC22A20A6NK97 555 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 A6NNC1 897 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 ALG1L2C9J202 215 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 H3BML4 177 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 TM9SF1O15321 606 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 BIRC5O15392 142 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 CTAG2O75638 210 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 SOX30O94993 753 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 KCNK2O95069 426 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 SNUPNO95149 360 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 OXSR1O95747 527 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 F8P00451 2351 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 SERPINE1P05121 402 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 CRHP06850 196 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 KRT16P08779 473 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 ACP2P11117 423 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 LAMP1P11279 417 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 IMPDH2P12268 514 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 ZNF17P17021 662 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 EFNA1P20827 205 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 PRPS1L1P21108 318 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 TBXA2RP21731 343 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 ARRB2P32121 409 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 CPA2P48052 419 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 ABCE1P61221 599 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 POU6F2P78424 691 aaPredicted RBP6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 FOXF2Q12947 444 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 FOXE3Q13461 319 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 PTGR1Q14914 329 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 CHI3L2Q15782 390 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 DUSP5Q16690 384 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 LSM12Q3MHD2 195 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 SPDYE7PQ495Y7 208 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 C6orf136Q5SQH8 315 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 CPTPQ5TA50 214 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 IL23RQ5VWK5 629 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 OR2A2Q6IF42 318 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 PLXDC2Q6UX71 529 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 GALNT10Q86SR1 603 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 HEATR5AQ86XA9 2040 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 MISPQ8IVT2 679 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 UBQLNLQ8IYU4 475 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 KIRREL3Q8IZU9 778 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 GCNT2Q8N0V5 402 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 COX18Q8N8Q8 333 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 OR56A1Q8NGH5 318 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 OR4C3Q8NH37 302 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 FBXO30Q8TB52 745 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 FAM110BQ8TC76 370 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 OR5P2Q8WZ92 322 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 COQ8BQ96D53 544 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 FAM120BQ96EK7 910 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 CHMP6Q96FZ7 201 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 ZIM3Q96PE6 472 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 STACQ99469 402 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 GPATCH1Q9BRR8 931 aaKnown RBP6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 C1orf50Q9BV19 199 aa6.12□□□□□ -1.43
CCDC88A-213ENST00000476903 RBM24Q9BX46 236 aaKnown RBP6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms