RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 CASP3P42574 277 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 MEF2AQ02078 507 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-209ENST00000472056 NTMT1Q9BV86 223 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 FBXO8Q9NRD0 319 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 LYRM2Q9NU23 88 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-209ENST00000472056 PSAT1Q9Y617 370 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 RIN1Q13671 783 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 APOOLQ6UXV4 268 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 MFSD6LQ8IWD5 586 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 RNF170Q96K19 258 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 SAP130Q9H0E3 1048 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 MRPL42Q9Y6G3 142 aaKnown RBP12.55□□□□□ -0.4
COL6A3-209ENST00000472056 CEP290O15078 2479 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 MYO7BQ6PIF6 2116 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 B4DXG7 233 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 S1PR4O95977 384 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 SERPINA5P05154 406 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 TBPP20226 339 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 EFNA3P52797 238 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 HABP2Q14520 560 aaPredicted RBP12.55□□□□□ -0.4
COL6A3-209ENST00000472056 CFAP77Q6ZQR2 320 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 NAA40Q86UY6 237 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 ADGRG5Q8IZF4 528 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 LRFN5Q96NI6 719 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 PTHP01270 115 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 C1QBP02746 253 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 MC3RP41968 323 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 GOLGA2P5Q9HBQ8 144 aa12.55□□□□□ -0.4
COL6A3-209ENST00000472056 MAGEB4O15481 346 aaPredicted RBP12.54□□□□□ -0.4
COL6A3-209ENST00000472056 PPP1R11O60927 126 aaPredicted RBP12.54□□□□□ -0.4
COL6A3-209ENST00000472056 MTNR1BP49286 362 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 DUSP6Q16828 381 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 SYT13Q7L8C5 426 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 SMAD9O15198 467 aaKnown RBP12.54□□□□□ -0.4
COL6A3-209ENST00000472056 KCNK5O95279 499 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 DDCP20711 480 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 TNFSF4P23510 183 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 LAP3P28838 519 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 RFX2P48378 723 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 PPP1R8Q12972 351 aaKnown RBP12.54□□□□□ -0.4
COL6A3-209ENST00000472056 ACSM3Q53FZ2 586 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 OCSTAMPQ9BR26 566 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 SCPEP1Q9HB40 452 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 CCL16O15467 120 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 TRAPPC6AO75865 159 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 POU3F3P20264 500 aaPredicted RBP12.54□□□□□ -0.4
COL6A3-209ENST00000472056 SGSHP51688 502 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 ECH1Q13011 328 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 OR51A7Q8NH64 312 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 FGGYQ96C11 551 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 MMP28Q9H239 520 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 FBXL12Q9NXK8 326 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 GPR37L1O60883 481 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 GPR4P46093 362 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 SYPL2Q5VXT5 272 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 WDR5BQ86VZ2 330 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 LYSMD1Q96S90 227 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 KATNB1Q9BVA0 655 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 GMEB2Q9UKD1 530 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 CAMK2AQ9UQM7 478 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 LSM5Q9Y4Y9 91 aaKnown RBP12.54□□□□□ -0.4
COL6A3-209ENST00000472056 SCAMP1O15126 338 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 RPS24P62847 133 aaKnown RBP12.54□□□□□ -0.4
COL6A3-209ENST00000472056 HTRA4P83105 476 aaPredicted RBP12.54□□□□□ -0.4
COL6A3-209ENST00000472056 CDC20Q12834 499 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 LBHQ53QV2 105 aaPredicted RBP12.54□□□□□ -0.4
COL6A3-209ENST00000472056 PLPP4Q5VZY2 271 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 ZNF516Q92618 1163 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 GSX2Q9BZM3 304 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 FAM221BA6H8Z2 402 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 CACNG3O60359 315 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 PNPP00491 289 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 RAB6AP20340 208 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 CTSOP43234 321 aaPredicted RBP12.54□□□□□ -0.4
COL6A3-209ENST00000472056 SLC5A8Q8N695 610 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 OR2A12Q8NGT7 310 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 BSCL2Q96G97 398 aaPredicted RBP12.54□□□□□ -0.4
COL6A3-209ENST00000472056 MOKQ9UQ07 419 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 MED12Q93074 2177 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 A0A087WUU8 490 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 OR2T7P0C7T2 308 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 IL1RNP18510 177 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 NR0B1P51843 470 aaKnown RBP12.54□□□□□ -0.4
COL6A3-209ENST00000472056 OC90Q02509 493 aaPredicted RBP12.54□□□□□ -0.4
COL6A3-209ENST00000472056 SFRP4Q6FHJ7 346 aaPredicted RBP12.54□□□□□ -0.4
COL6A3-209ENST00000472056 FAM124AQ86V42 546 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 CNTN4Q8IWV2 1026 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 UEVLDQ8IX04 471 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 CCDC116Q8IYX3 515 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 GCNT2Q8N0V5 402 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 OR2T27Q8NH04 317 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 OR4K15Q8NH41 348 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 GGHQ92820 318 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 HERPUD2Q9BSE4 406 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 BABAM2Q9NXR7 383 aa12.54□□□□□ -0.4
COL6A3-209ENST00000472056 MROH6A6NGR9 719 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 OPCMLQ14982 345 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 RGNQ15493 299 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 LTB4RQ15722 352 aa12.53□□□□□ -0.4
COL6A3-209ENST00000472056 SLC7A5P1Q8MH63 180 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms