RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 SNX13Q9Y5W8 968 aa13.41□□□□□ -0.26
COL9A3-209ENST00000469852 DNAJC13O75165 2243 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 TPST2O60704 377 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 NUDT14O95848 222 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 LGI1O95970 557 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 IGHG3P01860 377 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 LINGO3P0C6S8 592 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 HK1P19367 917 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 SUMO3P55854 103 aaPredicted RBP13.4□□□□□ -0.26
COL9A3-209ENST00000469852 FOXF1Q12946 379 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 SLC10A1Q14973 349 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 QPRTQ15274 297 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 NPTX1Q15818 432 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 NRF1Q16656 503 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 PLPPR5Q32ZL2 321 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 CYP2R1Q6VVX0 501 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 CBLL1Q75N03 491 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 TRILQ7L0X0 811 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 VTCN1Q7Z7D3 282 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 TSPYL5Q86VY4 417 aaPredicted RBP13.4□□□□□ -0.26
COL9A3-209ENST00000469852 CHERPQ8IWX8 916 aaKnown RBP13.4□□□□□ -0.26
COL9A3-209ENST00000469852 TOR1AIP2Q8NFQ8 470 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 TNIP2Q8NFZ5 429 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 OR14L1PQ8NHC6 308 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 VANGL1Q8TAA9 524 aaPredicted RBP13.4□□□□□ -0.26
COL9A3-209ENST00000469852 UTP4Q969X6 686 aaKnown RBP13.4□□□□□ -0.26
COL9A3-209ENST00000469852 GPR137Q96N19 417 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 PTGES2Q9H7Z7 377 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 PLSCR2Q9NRY7 297 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 QPCTLQ9NXS2 382 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 TAS2R10Q9NYW0 307 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 SPRR3Q9UBC9 169 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 TNFRSF10DQ9UBN6 386 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 MAGEL2Q9UJ55 1249 aa13.4□□□□□ -0.26
COL9A3-209ENST00000469852 CFAP73A6NFT4 308 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 SYT5O00445 386 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 ACOT8O14734 319 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 ZNF682O95780 498 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 PRKCAP17252 672 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 IL11P20809 199 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 HTR2AP28223 471 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 OR1E2P47887 323 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 RASSF2P50749 326 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 SELENOWP63302 87 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 BNIP2Q12982 314 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 CBFBQ13951 182 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 TRIM25Q14258 630 aaKnown RBP13.39□□□□□ -0.27
COL9A3-209ENST00000469852 GANABQ14697 944 aaKnown RBP13.39□□□□□ -0.27
COL9A3-209ENST00000469852 TMEM44Q2T9K0 475 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 DCST1Q5T197 706 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 ENPP6Q6UWR7 440 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 OR6T1Q8NGN1 323 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 TPD52L3Q96J77 140 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 GORASP2Q9H8Y8 452 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 ACKR4Q9NPB9 350 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 DCAF13Q9NV06 445 aaKnown RBP13.39□□□□□ -0.27
COL9A3-209ENST00000469852 SLC7A8Q9UHI5 535 aa13.39□□□□□ -0.27
COL9A3-209ENST00000469852 TRGV5A0A0B4J1U4 118 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 A0A1B0GTH9 108 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 OR2M5A3KFT3 312 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 ETV2O00321 342 aaPredicted RBP13.38□□□□□ -0.27
COL9A3-209ENST00000469852 EFNA2O43921 213 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 SEMA7AO75326 666 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 NTN1O95631 604 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 C8BP07358 591 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 PGCP20142 388 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 PSMA4P25789 261 aaKnown RBP13.38□□□□□ -0.27
COL9A3-209ENST00000469852 IDH2P48735 452 aaKnown RBP13.38□□□□□ -0.27
COL9A3-209ENST00000469852 ZNF41P51814 821 aaPredicted RBP13.38□□□□□ -0.27
COL9A3-209ENST00000469852 GFRA1P56159 465 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 RGS8P57771 180 aaPredicted RBP13.38□□□□□ -0.27
COL9A3-209ENST00000469852 SESN3P58005 492 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 TLE1Q04724 770 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 RAET1LQ5VY80 246 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 PRICKLE2Q7Z3G6 844 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 CARM1Q86X55 608 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 ZNF440Q8IYI8 595 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 BHLHE22Q8NFJ8 381 aaPredicted RBP13.38□□□□□ -0.27
COL9A3-209ENST00000469852 NEIL3Q8TAT5 605 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 MCUR1Q96AQ8 359 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 ASB9Q96DX5 294 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 HSH2DQ96JZ2 352 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 NSMCE2Q96MF7 247 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 RNF145Q96MT1 663 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 ARMC7Q9H6L4 198 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 HHATLQ9HCP6 504 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 AGPAT4Q9NRZ5 378 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 ACTR3BQ9P1U1 418 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 SH3GLB1Q9Y371 365 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 MRPS18CQ9Y3D5 142 aaKnown RBP13.38□□□□□ -0.27
COL9A3-209ENST00000469852 V9GYQ6 96 aa13.38□□□□□ -0.27
COL9A3-209ENST00000469852 A0A087WZY1 265 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 A0A1B0GVC2 190 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 TCRBV5S2A0A599 114 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 PRKD3O94806 890 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 IFNA14P01570 189 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 SLC6A8P48029 635 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 STARP49675 285 aa13.37□□□□□ -0.27
COL9A3-209ENST00000469852 IGFBP7Q16270 282 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms