RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 OR10A4Q9H209 315 aa8.63□□□□□ -1.03
USP39-212ENST00000465514 ACSS1Q9NUB1 689 aaPredicted RBP8.63□□□□□ -1.03
USP39-212ENST00000465514 FIS1Q9Y3D6 152 aa8.63□□□□□ -1.03
USP39-212ENST00000465514 CMYA5Q8N3K9 4069 aa8.63□□□□□ -1.03
USP39-212ENST00000465514 A0A1W2PQD3 144 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 AZIN1O14977 448 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 EFNA2O43921 213 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 GCM2O75603 506 aaPredicted RBP8.62□□□□□ -1.03
USP39-212ENST00000465514 VENTXO95231 258 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 NTN1O95631 604 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 CD3EP07766 207 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 LINGO3P0C6S8 592 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 LINC00032P0C843 101 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 PTNP21246 168 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 USF1P22415 310 aaPredicted RBP8.62□□□□□ -1.03
USP39-212ENST00000465514 CRHR1P34998 444 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 EIF1P41567 113 aaKnown RBP8.62□□□□□ -1.03
USP39-212ENST00000465514 PRIM2P49643 509 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 RPL38P63173 70 aaKnown RBP8.62□□□□□ -1.03
USP39-212ENST00000465514 IRX1P78414 480 aaPredicted RBP8.62□□□□□ -1.03
USP39-212ENST00000465514 POU6F2P78424 691 aaPredicted RBP8.62□□□□□ -1.03
USP39-212ENST00000465514 PDE7AQ13946 482 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 TSC22D1Q15714 1073 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 ZNF239Q16600 458 aaKnown RBP8.62□□□□□ -1.03
USP39-212ENST00000465514 RFTN2Q52LD8 501 aaPredicted RBP8.62□□□□□ -1.03
USP39-212ENST00000465514 EXOSC6Q5RKV6 272 aaKnown RBP8.62□□□□□ -1.03
USP39-212ENST00000465514 TMEM201Q5SNT2 666 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 LIPMQ5VYY2 423 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 ZCCHC12Q6PEW1 402 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 NUFIP2Q7Z417 695 aaKnown RBP8.62□□□□□ -1.03
USP39-212ENST00000465514 ATG4DQ86TL0 474 aaPredicted RBP8.62□□□□□ -1.03
USP39-212ENST00000465514 CNPY4Q8N129 248 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 CCDC63Q8NA47 563 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 STEAP2Q8NFT2 490 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 SEMA6DQ8NFY4 1073 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 ABHD3Q8WU67 409 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 FAM168AQ92567 244 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 JADE3Q92613 823 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 MSI2Q96DH6 328 aaKnown RBP8.62□□□□□ -1.03
USP39-212ENST00000465514 FAM120BQ96EK7 910 aaKnown RBP8.62□□□□□ -1.03
USP39-212ENST00000465514 REXO5Q96IC2 774 aaKnown RBP8.62□□□□□ -1.03
USP39-212ENST00000465514 KLHL15Q96M94 604 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 TACO1Q9BSH4 297 aaKnown RBP8.62□□□□□ -1.03
USP39-212ENST00000465514 BTBD2Q9BX70 525 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 HDHD5Q9BXW7 423 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 SRXN1Q9BYN0 137 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 TUBB1Q9H4B7 451 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 B3GALT5Q9Y2C3 310 aa8.62□□□□□ -1.03
USP39-212ENST00000465514 ZNF195O14628 629 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 LSM1O15116 133 aaKnown RBP8.61□□□□□ -1.03
USP39-212ENST00000465514 OIP5O43482 229 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 HSPA4LO95757 839 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 NUDT14O95848 222 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 SHBGP04278 402 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 HMGN2P05204 90 aaKnown RBP8.61□□□□□ -1.03
USP39-212ENST00000465514 PABPC4LP0CB38 370 aaKnown RBP8.61□□□□□ -1.03
USP39-212ENST00000465514 NEFHP12036 1026 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 BCKDHAP12694 445 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 RNF144AP50876 292 aaPredicted RBP8.61□□□□□ -1.03
USP39-212ENST00000465514 ZNF117Q03924 483 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 FOXF1Q12946 379 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 RNPS1Q15287 305 aaKnown RBP8.61□□□□□ -1.03
USP39-212ENST00000465514 CR1LQ2VPA4 569 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 TMEM176BQ3YBM2 270 aaPredicted RBP8.61□□□□□ -1.03
USP39-212ENST00000465514 GALNTL6Q49A17 601 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 NCMAPQ5T1S8 102 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 KANK2Q63ZY3 851 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 LRIG3Q6UXM1 1119 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 TFAP2EQ6VUC0 442 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 RNF165Q6ZSG1 346 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 R3HCC1LQ7Z5L2 792 aaKnown RBP8.61□□□□□ -1.03
USP39-212ENST00000465514 DTX2Q86UW9 622 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 C10orf107Q8IVU9 208 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 TUSC5Q8IXB3 177 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 GABRG1Q8N1C3 465 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 ZNF619Q8N2I2 560 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 BANPQ8N9N5 519 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 ATP6V1C2Q8NEY4 427 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 FBXO27Q8NI29 283 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 PHOSPHO1Q8TCT1 267 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 RNF128Q8TEB7 428 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 C10orf105Q8TEF2 133 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 CDS1Q92903 461 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 CPNE4Q96A23 557 aaPredicted RBP8.61□□□□□ -1.03
USP39-212ENST00000465514 MTERF3Q96E29 417 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 CHMP6Q96FZ7 201 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 ADAD1Q96M93 576 aaKnown RBP8.61□□□□□ -1.03
USP39-212ENST00000465514 RHOXF2Q9BQY4 288 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 TIGARQ9NQ88 270 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 SIRT3Q9NTG7 399 aaPredicted RBP8.61□□□□□ -1.03
USP39-212ENST00000465514 ZCCHC3Q9NUD5 404 aaKnown RBP8.61□□□□□ -1.03
USP39-212ENST00000465514 GIN1Q9NXP7 522 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 CARD8Q9Y2G2 431 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 TMED5Q9Y3A6 229 aa8.61□□□□□ -1.03
USP39-212ENST00000465514 NPIPA5A0A0B4J1W7 369 aa8.6□□□□□ -1.03
USP39-212ENST00000465514 SMIM23A6NLE4 172 aa8.6□□□□□ -1.03
USP39-212ENST00000465514 NPIPA7E9PJI5 369 aa8.6□□□□□ -1.03
USP39-212ENST00000465514 COPEO14579 308 aa8.6□□□□□ -1.03
USP39-212ENST00000465514 PRKD3O94806 890 aa8.6□□□□□ -1.03
USP39-212ENST00000465514 CHEK2O96017 543 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms