RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	DACH2	Q96NX9	599 aa		7.77	□□□□□ -1.17
RFX3-209	ENST00000451859	WFIKKN1	Q96NZ8	548 aa		7.77	□□□□□ -1.17
RFX3-209	ENST00000451859	SLC39A3	Q9BRY0	314 aa		7.77	□□□□□ -1.17
RFX3-209	ENST00000451859	HOXD1	Q9GZZ0	328 aa		7.77	□□□□□ -1.17
RFX3-209	ENST00000451859	OR51I1	Q9H343	314 aa		7.77	□□□□□ -1.17
RFX3-209	ENST00000451859	ASIC5	Q9NY37	505 aa		7.77	□□□□□ -1.17
RFX3-209	ENST00000451859	MKLN1	Q9UL63	735 aa		7.77	□□□□□ -1.17
RFX3-209	ENST00000451859	MCTS1	Q9ULC4	181 aa	Known RBP	7.77	□□□□□ -1.17
RFX3-209	ENST00000451859	PCDHGB4	Q9UN71	923 aa		7.77	□□□□□ -1.17
RFX3-209	ENST00000451859	EDAR	Q9UNE0	448 aa		7.77	□□□□□ -1.17
RFX3-209	ENST00000451859	EMC9	Q9Y3B6	208 aa		7.77	□□□□□ -1.17
RFX3-209	ENST00000451859	MTOR	P42345	2549 aa		7.77	□□□□□ -1.17
RFX3-209	ENST00000451859		A0A1W2PNR3	127 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	TMEM120B	A0PK00	339 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	C1QC	P02747	245 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	ALDOC	P09972	364 aa	Known RBP	7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	OR12D1	P0DN82	309 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	UBL4A	P11441	157 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	PSMA4	P25789	261 aa	Known RBP	7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	S100A3	P33764	101 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	CHI3L1	P36222	383 aa	Predicted RBP	7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	UGT2B10	P36537	528 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	ATP12A	P54707	1039 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	C21orf58	P58505	322 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	UFM1	P61960	85 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	RAC1	P63000	192 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	PPP2R2A	P63151	447 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	FGFBP1	Q14512	234 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	QPRT	Q15274	297 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	TMEM176B	Q3YBM2	270 aa	Predicted RBP	7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	FAM174B	Q3ZCQ3	159 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	KLHL26	Q53HC5	615 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	PDSS1	Q5T2R2	415 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	NXN	Q6DKJ4	435 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	ESPNL	Q6ZVH7	1005 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	MTERF4	Q7Z6M4	381 aa	Known RBP	7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	ACTRT2	Q8TDY3	377 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	XAGE5	Q8WWM1	108 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	OSTF1	Q92882	214 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	NINJ1	Q92982	152 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	DNAJA3	Q96EY1	480 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	REXO5	Q96IC2	774 aa	Known RBP	7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	ADGRG7	Q96K78	797 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	MARK4	Q96L34	752 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	KLHL15	Q96M94	604 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	SDF2	Q99470	211 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	FOXC2	Q99958	501 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	SLC35A5	Q9BS91	424 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	SRXN1	Q9BYN0	137 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	QRSL1	Q9H0R6	528 aa	Known RBP	7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	WDR55	Q9H6Y2	383 aa	Predicted RBP	7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	UBTD1	Q9HAC8	227 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	HHATL	Q9HCP6	504 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	ZNF226	Q9NYT6	803 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	DTNA	Q9Y4J8	743 aa		7.76	□□□□□ -1.17
RFX3-209	ENST00000451859	CAD	P27708	2225 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	ZFHX3	Q15911	3703 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	IGHV3-15	A0A0B4J1V0	119 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	C7orf72	A4D263	438 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	SERINC4	A6NH21	518 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859		E9PBE3	544 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	NPIPB9	F8W1W9	429 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	C16orf97	H3BN30	126 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	RNASET2	O00584	256 aa	Known RBP	7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	SDHD	O14521	159 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	ZNF195	O14628	629 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	ANKRD28	O15084	1053 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	ADAMDEC1	O15204	470 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	ZNF264	O43296	627 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	EFNA2	O43921	213 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	FCMR	O60667	390 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	STX11	O75558	287 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	ATE1	O95260	518 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	NTN1	O95631	604 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	CSTA	P01040	98 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	CGA	P01215	116 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	GSN	P06396	782 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	TUBB	P07437	444 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	UBTFL6	P0CB48	400 aa	Predicted RBP	7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	CD8B	P10966	210 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	CD99	P14209	185 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	PRKCA	P17252	672 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	UQCRC2	P22695	453 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	AGTR1	P30556	359 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	SLC7A1	P30825	629 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	EIF1	P41567	113 aa	Known RBP	7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	KHK	P50053	298 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	CLNS1A	P54105	237 aa	Known RBP	7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	CARD18	P57730	90 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	MAGOH	P61326	146 aa	Known RBP	7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	PHC1	P78364	1004 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	FOXD4	Q12950	439 aa	Predicted RBP	7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	CBFB	Q13951	182 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	GUSBP1	Q15486	140 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	ZNF239	Q16600	458 aa	Known RBP	7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	SMU1	Q2TAY7	513 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	GPAT3	Q53EU6	434 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	TNFAIP8L3	Q5GJ75	292 aa		7.75	□□□□□ -1.17
RFX3-209	ENST00000451859	ATAD3B	Q5T9A4	648 aa		7.75	□□□□□ -1.17

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms