RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 MYO16Q9Y6X6 1858 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 FAM25EA8MYX2 175 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 PHYHO14832 338 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 F10P00742 488 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 CELA2BP08218 269 aaPredicted RBP6.88□□□□□ -1.31
SYNE1-213ENST00000448038 SELENOVP59797 346 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 CBX3Q13185 183 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 RUNX2Q13950 521 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 HSD17B12Q53GQ0 312 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 GUSBP11Q6P575 273 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 BPHLQ86WA6 291 aaPredicted RBP6.88□□□□□ -1.31
SYNE1-213ENST00000448038 LINC01555Q8NAE3 123 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 GALNT6Q8NCL4 622 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF420Q8TAQ5 688 aaPredicted RBP6.88□□□□□ -1.31
SYNE1-213ENST00000448038 SLC2A12Q8TD20 617 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 ISOC1Q96CN7 298 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 PCDHGB2Q9Y5G2 931 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 METTL21EPA6NDL7 271 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 SNPHO15079 494 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 IGHA2P01877 340 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 GSTT2BP0CG30 244 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 BCKDHBP21953 392 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 YBX1P67809 324 aaKnown RBP6.88□□□□□ -1.31
SYNE1-213ENST00000448038 EEF1A1P68104 462 aaKnown RBP6.88□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF404Q494X3 552 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 ABI3BPQ7Z7G0 1075 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 OR7G2Q8NG99 324 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 TSLPQ969D9 159 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 POLE3Q9NRF9 147 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 TMPRSS11EQ9UL52 423 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 DHDHQ9UQ10 334 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 TSC22D4Q9Y3Q8 395 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 C12orf71A8MTZ7 269 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF208O43345 1280 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 PRPH2P23942 346 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 HNRNPA0Q13151 305 aaKnown RBP6.88□□□□□ -1.31
SYNE1-213ENST00000448038 MAD2L1BPQ15013 274 aaPredicted RBP6.88□□□□□ -1.31
SYNE1-213ENST00000448038 DGLUCYQ7Z3D6 616 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 KIAA0907Q7Z7F0 614 aaPredicted RBP6.88□□□□□ -1.31
SYNE1-213ENST00000448038 KLHDC8BQ8IXV7 354 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 RNF113BQ8IZP6 322 aaKnown RBP6.88□□□□□ -1.31
SYNE1-213ENST00000448038 DTWD2Q8NBA8 298 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 OR6T1Q8NGN1 323 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 NUDT22Q9BRQ3 303 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 GPN1Q9HCN4 374 aaPredicted RBP6.88□□□□□ -1.31
SYNE1-213ENST00000448038 SLC25A37Q9NYZ2 338 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 MED16Q9Y2X0 877 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 A0A0G2JMZ2 1700 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 CABIN1Q9Y6J0 2220 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 HTR3EA5X5Y0 456 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 SUSD5O60279 629 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 TNFRSF21O75509 655 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 GASTP01350 101 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 GNAO1P09471 354 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 GADD45AP24522 165 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 TGFBR2P37173 567 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 OR3A3P47888 321 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 OR3A2P47893 321 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 TMBIM6P55061 237 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 UBE2NP61088 152 aaKnown RBP6.88□□□□□ -1.31
SYNE1-213ENST00000448038 TSPAN31Q12999 210 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 TMEM176BQ3YBM2 270 aaPredicted RBP6.88□□□□□ -1.31
SYNE1-213ENST00000448038 SLC22A10Q63ZE4 541 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 RPS19BP1Q86WX3 136 aaKnown RBP6.88□□□□□ -1.31
SYNE1-213ENST00000448038 NT5CQ8TCD5 201 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 LRRC46Q96FV0 321 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 S1PR5Q9H228 398 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 CDCP1Q9H5V8 836 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF225Q9UK10 706 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 A0A1B0GWA3 101 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 CLPXO76031 633 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 ITGAMP11215 1152 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF182P17025 639 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-213ENST00000448038 POLR2HP52434 150 aaKnown RBP6.87□□□□□ -1.31
SYNE1-213ENST00000448038 FOXK1P85037 733 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 FAM189A2Q15884 450 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 PGGHGQ32M88 737 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 FAM219BQ5XKK7 198 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 SLC25A24Q6NUK1 477 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 TBPL2Q6SJ96 375 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 OR13C2Q8NGS9 318 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 PCDHGA8Q9Y5G5 932 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 OR2A25A4D2G3 310 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 CD8B2A6NJW9 211 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 HMGN4O00479 90 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 KDM4BO94953 1096 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 ALPLP05186 524 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 CD8BP10966 210 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 CD22P20273 847 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 FCARP24071 287 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 STT3AP46977 705 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 SPEM2Q0P670 501 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 CBLBQ13191 982 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 GLT8D1Q68CQ7 371 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 C22orf42Q6IC83 251 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 MARCH3Q86UD3 253 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 SLC35F3Q8IY50 421 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 LILRA2Q8N149 483 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 C8orf44Q96CB5 159 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 SLC35A4Q96G79 324 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms