RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TMEM41BQ5BJD5 291 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 MARCH8Q5T0T0 291 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 ATAD3BQ5T9A4 648 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 ATP1A1-AS1Q5TC04 95 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 ERASQ7Z444 233 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 GPR142Q7Z601 462 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 FAM228AQ86W67 206 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 CDKL3Q8IVW4 592 aaPredicted RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 CTAGE3PQ8IX95 158 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 PQLC3Q8N755 202 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 LRRC52Q8N7C0 313 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 STPG4Q8N801 248 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 COLGALT1Q8NBJ5 622 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 OR2T34Q8NGX1 318 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 TCP10LQ8TDR4 215 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 DCAKDQ8WVC6 231 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 DNAJB3Q8WWF6 145 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 FCAMRQ8WWV6 532 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 SUSD6Q92537 303 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 ZNF75CPQ92670 426 aaPredicted RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 C18orf25Q96B23 403 aaPredicted RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 OMA1Q96E52 524 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 GPA33Q99795 319 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 ZNF670Q9BS34 389 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 TRIM6Q9C030 488 aaPredicted RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 WWP1Q9H0M0 922 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 DHX35Q9H5Z1 703 aaKnown RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 FAM124BQ9H5Z6 455 aaPredicted RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 RMND5AQ9H871 391 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 COG4Q9H9E3 785 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 S100A14Q9HCY8 104 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 SLCO1B3Q9NPD5 702 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 SLC52A3Q9NQ40 469 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 ETNK2Q9NVF9 386 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 ATAD3AQ9NVI7 634 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 TECRQ9NZ01 308 aaKnown RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 SLC17A7Q9P2U7 560 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 LHX3Q9UBR4 397 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 UBQLN1Q9UMX0 589 aaKnown RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 DIMT1Q9UNQ2 313 aaKnown RBP3.58□□□□□ -1.84
VPS29-202ENST00000447578 STK38LQ9Y2H1 464 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 USH1CQ9Y6N9 552 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 LRRC37A2A6NM11 1700 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 DOCK5Q9H7D0 1870 aa3.58□□□□□ -1.84
VPS29-202ENST00000447578 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 A0A0U1RQV5 110 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 SH3PXD2BA1X283 911 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 NKX6-3A6NJ46 265 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 A8MUI8 341 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 SLC1A7O00341 560 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 PIRO00625 290 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 TM9SF1O15321 606 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 B4GAT1O43505 415 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 MGRN1O60291 552 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 CSO75390 466 aaKnown RBP3.57□□□□□ -1.84
VPS29-202ENST00000447578 SPAG6O75602 509 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 DCTN3O75935 186 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 MFN2O95140 757 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 SNX4O95219 450 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 PRAMEF12O95522 483 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 OPN1MWP04001 364 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 CA3P07451 260 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 KRT16P08779 473 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 FAM157CP0CG43 387 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 OPN1MW2P0DN77 364 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 OPN1MW3P0DN78 364 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 TROVE2P10155 538 aaKnown RBP eCLIP3.57□□□□□ -1.84
VPS29-202ENST00000447578 GP9P14770 177 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 LMO2P25791 158 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 AXLP30530 894 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 ALDH3A1P30838 453 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 SOX3P41225 446 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 OR3A2P47893 321 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 VEGFCP49767 419 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 ATP12AP54707 1039 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 PHEXP78562 749 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 GBE1Q04446 702 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 MFGE8Q08431 387 aaPredicted RBP3.57□□□□□ -1.84
VPS29-202ENST00000447578 HSPA14Q0VDF9 509 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 BST2Q10589 180 aaKnown RBP3.57□□□□□ -1.84
VPS29-202ENST00000447578 MEF2DQ14814 521 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 ZBTB6Q15916 424 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 MAJINQ3KP22 176 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 ACCSLQ4AC99 568 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 FAM106AQ4KMX7 169 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 LRRC23Q53EV4 343 aaPredicted RBP3.57□□□□□ -1.84
VPS29-202ENST00000447578 CFAP157Q5JU67 520 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 LGSNQ5TDP6 509 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 NCR3LG1Q68D85 454 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 SLC25A47Q6Q0C1 308 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 RBMS3Q6XE24 437 aaKnown RBP3.57□□□□□ -1.84
VPS29-202ENST00000447578 NLRP9Q7RTR0 991 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 TRPT1Q86TN4 253 aaKnown RBP3.57□□□□□ -1.84
VPS29-202ENST00000447578 UNC93AQ86WB7 457 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 C17orf64Q86WR6 236 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 LRRC6Q86X45 466 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 CACUL1Q86Y37 369 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 GCNT2Q8N0V5 402 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 DEFB106AQ8N104 65 aa3.57□□□□□ -1.84
VPS29-202ENST00000447578 FADS6Q8N9I5 356 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms