RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 CLHC1Q8NHS4 586 aa6.95□□□□□ -1.3
CD44-211ENST00000442151 CDS1Q92903 461 aa6.95□□□□□ -1.3
CD44-211ENST00000442151 MUCL1Q96DR8 90 aa6.95□□□□□ -1.3
CD44-211ENST00000442151 C16orf58Q96GQ5 468 aa6.95□□□□□ -1.3
CD44-211ENST00000442151 ZC3HAV1LQ96H79 300 aaKnown RBP6.95□□□□□ -1.3
CD44-211ENST00000442151 RADILQ96JH8 1075 aa6.95□□□□□ -1.3
CD44-211ENST00000442151 OR7D2Q96RA2 312 aa6.95□□□□□ -1.3
CD44-211ENST00000442151 CACYBPQ9HB71 228 aaKnown RBP6.95□□□□□ -1.3
CD44-211ENST00000442151 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.95□□□□□ -1.3
CD44-211ENST00000442151 EMC3Q9P0I2 261 aa6.95□□□□□ -1.3
CD44-211ENST00000442151 MPDZO75970 2070 aa6.95□□□□□ -1.3
CD44-211ENST00000442151 A0A0J9YW62 118 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 PRSS51A0A1B0GVH4 220 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 GPR171O14626 319 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 DNPH1O43598 174 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 SPAG7O75391 227 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 AQP8O94778 261 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 C6orf47O95873 294 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 SERPINE1P05121 402 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 CHRNGP07510 517 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 CD3EP07766 207 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 LINGO3P0C6S8 592 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 PAX1P15863 534 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 UQCRC2P22695 453 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 PSMA4P25789 261 aaKnown RBP6.94□□□□□ -1.3
CD44-211ENST00000442151 APOBEC1P41238 236 aaKnown RBP6.94□□□□□ -1.3
CD44-211ENST00000442151 HTR3AP46098 478 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 ABCE1P61221 599 aaKnown RBP6.94□□□□□ -1.3
CD44-211ENST00000442151 WDR93Q6P2C0 686 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 FCRLAQ7L513 359 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 YTHDF3Q7Z739 585 aaKnown RBP6.94□□□□□ -1.3
CD44-211ENST00000442151 CXorf67Q86X51 503 aaPredicted RBP6.94□□□□□ -1.3
CD44-211ENST00000442151 DEPDC4Q8N2C3 294 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 OR8J2Q8NGG1 315 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 FBXO27Q8NI29 283 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 GPR119Q8TDV5 335 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 ZFP90Q8TF47 636 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 ROBO4Q8WZ75 1007 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 ADGRG7Q96K78 797 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 SLC35G5Q96KT7 338 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 SDF2Q99470 211 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 ZBTB18Q99592 522 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 GSX2Q9BZM3 304 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 ACTR6Q9GZN1 396 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 TNFRSF12AQ9NP84 129 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 DLL4Q9NR61 685 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 SIRT3Q9NTG7 399 aaPredicted RBP6.94□□□□□ -1.3
CD44-211ENST00000442151 FAIMQ9NVQ4 179 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 KLHL13Q9P2N7 655 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 ZDHHC2Q9UIJ5 367 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 LIPT1Q9Y234 373 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 CARD8Q9Y2G2 431 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 RAP2CQ9Y3L5 183 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 OTOGQ6ZRI0 2925 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 SERINC4A6NH21 518 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 ZNF724A8MTY0 619 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 SLCO1B7G3V0H7 640 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 HS3ST1O14792 307 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 DIAPH2O60879 1101 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 LBPP18428 481 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 AGTR1P30556 359 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 SFTPDP35247 375 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 IDUAP35475 653 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 RPL14P50914 215 aaKnown RBP6.94□□□□□ -1.3
CD44-211ENST00000442151 PPP2R2BQ00005 443 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 ITGADQ13349 1161 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 CAPRIN1Q14444 709 aaKnown RBP6.94□□□□□ -1.3
CD44-211ENST00000442151 PDK3Q15120 406 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 ZNF141Q15928 474 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 KRT71Q3SY84 523 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 Q5PR19 223 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 SFRP5Q5T4F7 317 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 CCNJQ5T5M9 372 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 ADAM5Q6NVV9 412 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 C3orf33Q6P1S2 294 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 STAC2Q6ZMT1 411 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 ZNF704Q6ZNC4 412 aaPredicted RBP6.94□□□□□ -1.3
CD44-211ENST00000442151 ZNF550Q7Z398 422 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 SPATA19Q7Z5L4 167 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 MED12LQ86YW9 2145 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 CMIPQ8IY22 773 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 OR4A15Q8NGL6 344 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 FBXO30Q8TB52 745 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 MIPOL1Q8TD10 442 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 RNF128Q8TEB7 428 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 KISS1RQ969F8 398 aaPredicted RBP6.94□□□□□ -1.3
CD44-211ENST00000442151 NAA11Q9BSU3 229 aaPredicted RBP6.94□□□□□ -1.3
CD44-211ENST00000442151 RTN4RQ9BZR6 473 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 C12orf65Q9H3J6 166 aaKnown RBP6.94□□□□□ -1.3
CD44-211ENST00000442151 ARMC7Q9H6L4 198 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 BARX1Q9HBU1 254 aaPredicted RBP6.94□□□□□ -1.3
CD44-211ENST00000442151 ACER3Q9NUN7 267 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 FBXO34Q9NWN3 711 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 PARPBPQ9NWS1 579 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 SLC17A7Q9P2U7 560 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 ICAM5Q9UMF0 924 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 MGAT4BQ9UQ53 548 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 PTGDR2Q9Y5Y4 395 aa6.94□□□□□ -1.3
CD44-211ENST00000442151 SETD2Q9BYW2 2564 aaPredicted RBP6.94□□□□□ -1.3
CD44-211ENST00000442151 RNF103-CHMP3A0A140T963 221 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms