RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 EXOSC6Q5RKV6 272 aaKnown RBP12.9□□□□□ -0.34
SDC1-204ENST00000429035 PDZK1Q5T2W1 519 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 SFRP5Q5T4F7 317 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 IL23RQ5VWK5 629 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 ATG4DQ86TL0 474 aaPredicted RBP12.9□□□□□ -0.34
SDC1-204ENST00000429035 GABRG1Q8N1C3 465 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 SFXN5Q8TD22 340 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 TUBGCP3Q96CW5 907 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 TRMT61AQ96FX7 289 aaKnown RBP12.9□□□□□ -0.34
SDC1-204ENST00000429035 SLC35G5Q96KT7 338 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 OR5B2Q96R09 309 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 PRPF18Q99633 342 aaKnown RBP12.9□□□□□ -0.34
SDC1-204ENST00000429035 POTEKPQ9BYX7 375 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 ZNF701Q9NV72 531 aaPredicted RBP12.9□□□□□ -0.34
SDC1-204ENST00000429035 MKS1Q9NXB0 559 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 KLHL9Q9P2J3 617 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 PRSS50Q9UI38 385 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 ICAM5Q9UMF0 924 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 DTNAQ9Y4J8 743 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 CADP27708 2225 aa12.9□□□□□ -0.34
SDC1-204ENST00000429035 C9JVG2 144 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 RNF223E7ERA6 249 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 ZNF264O43296 627 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 EFNA2O43921 213 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 SOD3P08294 240 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 ENPP1P22413 925 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 ADH6P28332 368 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 IFFO1Q0D2I5 559 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 CBFBQ13951 182 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 PGS1Q32NB8 556 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 KLHL26Q53HC5 615 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 XKR7Q5GH72 579 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 NCMAPQ5T1S8 102 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 C3orf33Q6P1S2 294 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 BHLHA15Q7RTS1 189 aaPredicted RBP12.89□□□□□ -0.35
SDC1-204ENST00000429035 OLIG3Q7RTU3 272 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 CLEC4FQ8N1N0 589 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 GPR119Q8TDV5 335 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 IGFBPL1Q8WX77 278 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 ZNF775Q96BV0 537 aaPredicted RBP12.89□□□□□ -0.35
SDC1-204ENST00000429035 MOAP1Q96BY2 351 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 DNAJA3Q96EY1 480 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 MRGPRX4Q96LA9 322 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 PPP1R36Q96LQ0 422 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 C3orf30Q96M34 536 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 ZNF300Q96RE9 604 aaPredicted RBP12.89□□□□□ -0.35
SDC1-204ENST00000429035 DUSP26Q9BV47 211 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 HDHD5Q9BXW7 423 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 QRSL1Q9H0R6 528 aaKnown RBP12.89□□□□□ -0.35
SDC1-204ENST00000429035 ALG2Q9H553 416 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 GPATCH2Q9NW75 528 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 MAGED1Q9Y5V3 778 aaPredicted RBP12.89□□□□□ -0.35
SDC1-204ENST00000429035 DNHD1Q96M86 4753 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 RTTNQ86VV8 2226 aa12.89□□□□□ -0.35
SDC1-204ENST00000429035 RNF103-CHMP3A0A140T963 221 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 TMCC2O75069 709 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 LYPLA1O75608 230 aaPredicted RBP12.88□□□□□ -0.35
SDC1-204ENST00000429035 YES1P07947 543 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 FGF4P08620 206 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 CASP9P55211 416 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 BSPH1Q075Z2 132 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 DMTNQ08495 405 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 RASGEF1BQ0VAM2 473 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 ITGADQ13349 1161 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 UGT3A2Q3SY77 523 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 C6orf136Q5SQH8 315 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 C16orf62Q7Z3J2 963 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 HOMEZQ8IX15 550 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 CLECL1Q8IZS7 167 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 SLC43A2Q8N370 569 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 OR5W2Q8NH69 310 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 TCP10LQ8TDR4 215 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 SMAP2Q8WU79 429 aaPredicted RBP12.88□□□□□ -0.35
SDC1-204ENST00000429035 ARL8AQ96BM9 186 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 PSD2Q9BQI7 771 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 BHLHE41Q9C0J9 482 aaPredicted RBP12.88□□□□□ -0.35
SDC1-204ENST00000429035 ACTL7BQ9Y614 415 aa12.88□□□□□ -0.35
SDC1-204ENST00000429035 SONP18583 2426 aaKnown RBP12.87□□□□□ -0.35
SDC1-204ENST00000429035 CENPVL1A0A0U1RR11 272 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 H6PDO95479 791 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 FESP07332 822 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 UBTFL6P0CB48 400 aaPredicted RBP12.87□□□□□ -0.35
SDC1-204ENST00000429035 TFPIP10646 304 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 PAX1P15863 534 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 MATN1P21941 496 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 CDH11P55287 796 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 HBA1P69905 142 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 MERTKQ12866 999 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 PDCD2Q16342 344 aaPredicted RBP12.87□□□□□ -0.35
SDC1-204ENST00000429035 ZNF672Q499Z4 452 aaPredicted RBP12.87□□□□□ -0.35
SDC1-204ENST00000429035 TIGD2Q4W5G0 525 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 BHLHB9Q6PI77 547 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 ZNF100Q8IYN0 542 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 RIBC1Q8N443 379 aaPredicted RBP12.87□□□□□ -0.35
SDC1-204ENST00000429035 NATD1Q8N6N6 113 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 EIF1ADQ8N9N8 165 aaKnown RBP12.87□□□□□ -0.35
SDC1-204ENST00000429035 OR4A15Q8NGL6 344 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 LILRB1Q8NHL6 650 aaPredicted RBP12.87□□□□□ -0.35
SDC1-204ENST00000429035 HSD17B8Q92506 261 aa12.87□□□□□ -0.35
SDC1-204ENST00000429035 ZNF524Q96C55 264 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms