RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 THRSPQ92748 146 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 EFHD2Q96C19 240 aaPredicted RBP7.73□□□□□ -1.17
USP54-203ENST00000418501 DDIT4LQ96D03 193 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 ZHX1-C8orf76Q96EF9 292 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 LRR1Q96L50 414 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 OR52D1Q9H346 318 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 LOXL2Q9Y4K0 774 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 NPFFR2Q9Y5X5 522 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 CROCCQ5TZA2 2017 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 NSG1A0A0A6YYJ2 146 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 TRIM64A6NGJ6 449 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 XPNPEP2O43895 674 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 SLC1A3P43003 542 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 PON3Q15166 354 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 PAMR1Q6UXH9 720 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 FAM220AQ7Z4H9 259 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 RBM45Q8IUH3 476 aaKnown RBP7.73□□□□□ -1.17
USP54-203ENST00000418501 GPALPP1Q8IXQ4 340 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 ANKK1Q8NFD2 765 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 UFD1Q92890 307 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 ISOC1Q96CN7 298 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 EDEM2Q9BV94 578 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 NUDT9Q9BW91 350 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 EXOSC4Q9NPD3 245 aaKnown RBP7.73□□□□□ -1.17
USP54-203ENST00000418501 NANSQ9NR45 359 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 DNAJB12Q9NXW2 375 aaKnown RBP7.73□□□□□ -1.17
USP54-203ENST00000418501 ADAM30Q9UKF2 790 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 ALG1L2C9J202 215 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 SLC30A4O14863 429 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 FRS3O43559 492 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 AIREO43918 545 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 GKN3PP0CG01 181 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 MAP3K8P41279 467 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 GUCA1AP43080 201 aaPredicted RBP7.73□□□□□ -1.17
USP54-203ENST00000418501 GPR4P46093 362 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 MTNR1AP48039 350 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 MASP1P48740 699 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 RNF4P78317 190 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 EBPQ15125 230 aaKnown RBP7.73□□□□□ -1.17
USP54-203ENST00000418501 BTBD16Q32M84 506 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 C3orf38Q5JPI3 329 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 NXNL2Q5VZ03 156 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 FAM205BPQ63HN1 556 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 ZNF620Q6ZNG0 422 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 LINC00299Q6ZSB3 139 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 NAXDQ8IW45 347 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 ARHGEF39Q8N4T4 335 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 ASB15Q8WXK1 588 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 DDA1Q9BW61 102 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 CDCA4Q9BXL8 241 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 ANKRA2Q9H9E1 313 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 HMG20AQ9NP66 347 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 TAS2R10Q9NYW0 307 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 IL20Q9NYY1 176 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 VSTM2BA6NLU5 285 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 H3BSA7 217 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 KPNA4O00629 521 aaPredicted RBP7.73□□□□□ -1.17
USP54-203ENST00000418501 IMPA2O14732 288 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 SEC14L2O76054 403 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 S1PR1P21453 382 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 RBMS1P29558 406 aaKnown RBP7.73□□□□□ -1.17
USP54-203ENST00000418501 EIF1P41567 113 aaKnown RBP7.73□□□□□ -1.17
USP54-203ENST00000418501 KRR1Q13601 381 aaKnown RBP7.73□□□□□ -1.17
USP54-203ENST00000418501 NNATQ16517 81 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 EMC4Q5J8M3 183 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 SYT6Q5T7P8 510 aaPredicted RBP7.73□□□□□ -1.17
USP54-203ENST00000418501 RNLSQ5VYX0 342 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 ISLR2Q6UXK2 745 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 DPY19L2P2Q6ZN68 376 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 RAB11FIP2Q7L804 512 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 ANKRD13BQ86YJ7 626 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 PROKR2Q8NFJ6 384 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 OR13F1Q8NGS4 319 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 M1APQ8TC57 530 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 AP3S1Q92572 193 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 RNFT2Q96EX2 444 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 MNTQ99583 582 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 NXF5Q9H1B4 397 aaKnown RBP7.73□□□□□ -1.17
USP54-203ENST00000418501 GPN2Q9H9Y4 310 aaPredicted RBP7.73□□□□□ -1.17
USP54-203ENST00000418501 ISYNA1Q9NPH2 558 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 SPAG17Q6Q759 2223 aa7.73□□□□□ -1.17
USP54-203ENST00000418501 NPIPA5A0A0B4J1W7 369 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 A0A1W2PQM1 296 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 CLDN24A6NM45 220 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 GJE1A6NN92 205 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 NPIPA7E9PJI5 369 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 CCRL2O00421 344 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 NTN3O00634 580 aaPredicted RBP7.72□□□□□ -1.17
USP54-203ENST00000418501 PHYHO14832 338 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 TLX3O43711 291 aaPredicted RBP7.72□□□□□ -1.17
USP54-203ENST00000418501 INMTO95050 263 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 SERPINA3P01011 423 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 RAB40ALP0C0E4 278 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 ZNF806P0C7X5 589 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 NPIPA8P0DM63 369 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 CD36P16671 472 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 FUT1P19526 365 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 CD82P27701 267 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 CRYBA2P53672 197 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 CLEC12AQ5QGZ9 265 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms