RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 CBLCQ9ULV8 474 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 MED31Q9Y3C7 131 aa12.41□□□□□ -0.42
VPS54-203ENST00000409558 COL4A3Q01955 1670 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 GABRG2P18507 467 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 SRP9P49458 86 aaKnown RBP12.4□□□□□ -0.42
VPS54-203ENST00000409558 TRA2BP62995 288 aaKnown RBP12.4□□□□□ -0.42
VPS54-203ENST00000409558 TUBA3EQ6PEY2 450 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 RBM12BQ8IXT5 1001 aaKnown RBP12.4□□□□□ -0.42
VPS54-203ENST00000409558 VWA5B2Q8N398 1253 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 C17orf47Q8NEP4 570 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 PHF21AQ96BD5 680 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 CPNE5Q9HCH3 593 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 CACNA1EQ15878 2313 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 MEIOCA2RUB1 952 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 RAB40BQ12829 278 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 NDUFA9Q16795 377 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 PLET1Q6UQ28 207 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 RASSF6Q6ZTQ3 369 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 MBOAT2Q6ZWT7 520 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 ACBD7Q8N6N7 88 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 LMX1AQ8TE12 382 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 SERINC2Q96SA4 455 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 ELF4Q99607 663 aaPredicted RBP12.4□□□□□ -0.42
VPS54-203ENST00000409558 NT5DC2Q9H857 520 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 TESQ9UGI8 421 aaKnown RBP12.4□□□□□ -0.42
VPS54-203ENST00000409558 FREM2Q5SZK8 3169 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 NCOR1O75376 2440 aa12.4□□□□□ -0.42
VPS54-203ENST00000409558 TRAPPC13A5PLN9 417 aa12.4□□□□□ -0.43
VPS54-203ENST00000409558 OR5F1O95221 314 aa12.4□□□□□ -0.43
VPS54-203ENST00000409558 RFX2P48378 723 aa12.4□□□□□ -0.43
VPS54-203ENST00000409558 CLDN12P56749 244 aa12.4□□□□□ -0.43
VPS54-203ENST00000409558 PLK5Q496M5 336 aa12.4□□□□□ -0.43
VPS54-203ENST00000409558 ATAD3CQ5T2N8 411 aa12.4□□□□□ -0.43
VPS54-203ENST00000409558 OR5M10Q6IEU7 315 aa12.4□□□□□ -0.43
VPS54-203ENST00000409558 SLC35B4Q969S0 331 aa12.4□□□□□ -0.43
VPS54-203ENST00000409558 PDCD1LG2Q9BQ51 273 aa12.4□□□□□ -0.43
VPS54-203ENST00000409558 IER3IP1Q9Y5U9 82 aa12.4□□□□□ -0.43
VPS54-203ENST00000409558 A0A0G2JMP0 313 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 A0A0X1KG70 313 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 C2orf74A8MZ97 194 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 DYRK3O43781 588 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 AKAP8O43823 692 aaKnown RBP12.39□□□□□ -0.43
VPS54-203ENST00000409558 PTTG1O95997 202 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 TNFP01375 233 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 IL17RDQ8NFM7 739 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 OR4M2Q8NGB6 313 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 OR4C3Q8NH37 302 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 RIT1Q92963 219 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 ITFG2Q969R8 447 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 HS6ST2Q96MM7 605 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 SLC22A7Q9Y694 548 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 A0A087WV48 116 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 A0A1B0GWA3 101 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 ISPDA4D126 451 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 FAM86C2PA6NEL3 165 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 GPR75O95800 540 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 ZNF10P21506 573 aaPredicted RBP12.39□□□□□ -0.43
VPS54-203ENST00000409558 ZNF136P52737 540 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 GFERP55789 205 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.39□□□□□ -0.43
VPS54-203ENST00000409558 SMAD2Q15796 467 aaKnown RBP12.39□□□□□ -0.43
VPS54-203ENST00000409558 SSX6Q7RTT6 188 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 ZNF619Q8N2I2 560 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 SRRQ9GZT4 340 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 SLC25A18Q9H1K4 315 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 DHCR7Q9UBM7 475 aaKnown RBP12.39□□□□□ -0.43
VPS54-203ENST00000409558 GNG8Q9UK08 70 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 CA14Q9ULX7 337 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 CDH10Q9Y6N8 788 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 LTBP2Q14767 1821 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 HTR3EA5X5Y0 456 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 OR6C70A6NIJ9 312 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 RIIAD1A6NNX1 92 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 ITPKBP27987 946 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 SOX2P48431 317 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 ERVK-25P63136 954 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 C1orf189Q5VU69 101 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 RTL10Q7L3V2 364 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 CLDN22Q8N7P3 220 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 ELSPBP1Q96BH3 223 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 SP140LQ9H930 580 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 SRA1Q9HD15 236 aaKnown RBP12.39□□□□□ -0.43
VPS54-203ENST00000409558 MEPEQ9NQ76 525 aaPredicted RBP12.39□□□□□ -0.43
VPS54-203ENST00000409558 ING1Q9UK53 422 aaPredicted RBP12.39□□□□□ -0.43
VPS54-203ENST00000409558 ALPK3Q96L96 1907 aa12.39□□□□□ -0.43
VPS54-203ENST00000409558 EEF1E1O43324 174 aaKnown RBP12.38□□□□□ -0.43
VPS54-203ENST00000409558 F13BP05160 661 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 PIPP12273 146 aaPredicted RBP12.38□□□□□ -0.43
VPS54-203ENST00000409558 CPEP16870 476 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 FOXK2Q01167 660 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 BEST4Q8NFU0 473 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.38□□□□□ -0.43
VPS54-203ENST00000409558 TMCO6Q96DC7 493 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 NMNAT3Q96T66 252 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 FUZQ9BT04 418 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 RASD1Q9Y272 281 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 AK6Q9Y3D8 172 aaKnown RBP12.38□□□□□ -0.43
VPS54-203ENST00000409558 N6AMT1Q9Y5N5 214 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 MPDZO75970 2070 aa12.38□□□□□ -0.43
VPS54-203ENST00000409558 E9PQ18 207 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms