RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 LIN7BQ9HAP6 207 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 SMCO4Q9NRQ5 59 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 POT1Q9NUX5 634 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 ERVK13-1Q9NX77 482 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 ZNF226Q9NYT6 803 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 RHCGQ9UBD6 479 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 LHX6Q9UPM6 363 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 MDFIC2A0A1B0GVS7 189 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 NAGAP17050 411 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 IL3RAP26951 378 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 PRKAR1BP31321 381 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 CSNK1A1P48729 337 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 TAGLNQ01995 201 aaKnown RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 PDE7AQ13946 482 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 TAZQ16635 292 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 CPOQ8IVL8 374 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 IQCF1Q8N6M8 205 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 CYB5D2Q8WUJ1 264 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 KCNE4Q8WWG9 221 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 SGK3Q96BR1 496 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 DUS3LQ96G46 650 aaKnown RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 SLC6A18Q96N87 628 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 PBX4Q9BYU1 374 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 TMEM38AQ9H6F2 299 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 EGLN3Q9H6Z9 239 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 SPACA1Q9HBV2 294 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 NRIP3Q9NQ35 241 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 B3GAT1Q9P2W7 334 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 A0A1W2PPH5 198 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 MSTNO14793 375 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 ARPC5O15511 151 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 ONECUT3O60422 494 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 HLA-HP01893 362 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 LAMP1P11279 417 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 CNR1P21554 472 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 HLA-DMAP28067 261 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 POU3F4P49335 361 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 CAV2P51636 162 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 LRRC37A5PQ49AS3 106 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 RAET1LQ5VY80 246 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 DESI1Q6ICB0 168 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 OTOP2Q7RTS6 562 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 PLPP6Q8IY26 295 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 METTL4Q8N3J2 472 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 OR4N2Q8NGD1 307 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 FAM46AQ96IP4 442 aaKnown RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 SAMD8Q96LT4 415 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 CMTM3Q96MX0 182 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 A4GALTQ9NPC4 353 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 RPS10P5Q9NQ39 176 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 ACTR10Q9NZ32 417 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 APOBEC3BQ9UH17 382 aaKnown RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 STRAPQ9Y3F4 350 aaKnown RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 C11orf98E9PRG8 122 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 J3QR89 54 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 GFRA2O00451 464 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 EIF1BO60739 113 aaKnown RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 LCKP06239 509 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 PROS1P07225 676 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 CALCBP10092 127 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 RPL17P18621 184 aaKnown RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 IMPA1P29218 277 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 ETV3P41162 512 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 EIF1P41567 113 aaKnown RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 ZNF140P52738 457 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 PLA2G7Q13093 441 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 DEFB134Q4QY38 66 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 ESCO2Q56NI9 601 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 PAN3Q58A45 887 aaKnown RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 PSAPL1Q6NUJ1 521 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 HTR3DQ70Z44 454 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 TMEM151BQ8IW70 566 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 FRMD1Q8N878 549 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 BPIFA2Q96DR5 249 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 HRASLS5Q96KN8 279 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 OR1F2PQ96R84 312 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 SLC17A9Q9BYT1 436 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 RNF32Q9H0A6 362 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 SAP130Q9H0E3 1048 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 ZCCHC4Q9H5U6 513 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 PCDHB10Q9UN67 800 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 PCYT1BQ9Y5K3 369 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-203ENST00000409050 WNT6Q9Y6F9 365 aa5.73□□□□□ -1.49
SCN1A-203ENST00000409050 A0A1W2PQU0 124 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 RTCAO00442 366 aaKnown RBP5.72□□□□□ -1.49
SCN1A-203ENST00000409050 ARPC1BO15143 372 aaKnown RBP5.72□□□□□ -1.49
SCN1A-203ENST00000409050 GABARAPO95166 117 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 MT-ATP6P00846 226 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 RHOP08100 348 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 SDC1P18827 310 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 TNFRSF4P43489 277 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 PRLHRP49683 370 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 RAB11AP62491 216 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 ADARB1P78563 741 aaKnown RBP5.72□□□□□ -1.49
SCN1A-203ENST00000409050 EML3Q32P44 896 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 DCST2Q5T1A1 773 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 SYT6Q5T7P8 510 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-203ENST00000409050 CRTC1Q6UUV9 634 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 SUSD1Q6UWL2 747 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 GALNT10Q86SR1 603 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms