RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 SFRP4Q6FHJ7 346 aaPredicted RBP17.25■□□□□ 0.35
USP48-204ENST00000400301 ZNF836Q6ZNA1 936 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 USP53Q70EK8 1073 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 TEX101Q9BY14 249 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.25■□□□□ 0.35
USP48-204ENST00000400301 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.25■□□□□ 0.35
USP48-204ENST00000400301 LRRTM2O43300 516 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 FCRL1Q96LA6 429 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 DAPP1Q9UN19 280 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 A4GNTQ9UNA3 340 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 MYOFQ9NZM1 2061 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 TRDV1A0A1B0GX56 115 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 ADAM23O75077 832 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 CSN2P05814 226 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 ITGB8P26012 769 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 SHC1P29353 583 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 OPRD1P41143 372 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 ZNF793Q6ZN11 406 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 ARSGQ96EG1 525 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 RANGRFQ9HD47 186 aaPredicted RBP17.25■□□□□ 0.35
USP48-204ENST00000400301 POT1Q9NUX5 634 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 SERTAD3Q9UJW9 196 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 TEX13CA0A0J9YWL9 993 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 CD3GP09693 182 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 ADH7P40394 386 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 STARP49675 285 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 MTFR2Q6P444 385 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 ATCAYQ86WG3 371 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 SFTPA1Q8IWL2 248 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 LINC01555Q8NAE3 123 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 OR5T3Q8NGG3 340 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 HINT3Q9NQE9 182 aaKnown RBP17.25■□□□□ 0.35
USP48-204ENST00000400301 CPED1A4D0V7 1026 aa17.24■□□□□ 0.35
USP48-204ENST00000400301 PLCXD2Q0VAA5 305 aa17.24■□□□□ 0.35
USP48-204ENST00000400301 CCL4L1Q8NHW4 92 aa17.24■□□□□ 0.35
USP48-204ENST00000400301 TOE1Q96GM8 510 aaKnown RBP17.24■□□□□ 0.35
USP48-204ENST00000400301 SDF2Q99470 211 aa17.24■□□□□ 0.35
USP48-204ENST00000400301 SERGEFQ9UGK8 458 aa17.24■□□□□ 0.35
USP48-204ENST00000400301 KCNE3Q9Y6H6 103 aa17.24■□□□□ 0.35
USP48-204ENST00000400301 A0A0A6YYD5 115 aa17.24■□□□□ 0.35
USP48-204ENST00000400301 SLC2A10O95528 541 aa17.24■□□□□ 0.35
USP48-204ENST00000400301 HTRA4P83105 476 aaPredicted RBP17.24■□□□□ 0.35
USP48-204ENST00000400301 FOXK2Q01167 660 aa17.24■□□□□ 0.35
USP48-204ENST00000400301 RPL6Q02878 288 aaKnown RBP17.24■□□□□ 0.35
USP48-204ENST00000400301 GRM7Q14831 915 aa17.24■□□□□ 0.35
USP48-204ENST00000400301 LRRC28Q86X40 367 aaPredicted RBP17.24■□□□□ 0.35
USP48-204ENST00000400301 INPP5EQ9NRR6 644 aa17.24■□□□□ 0.35
USP48-204ENST00000400301 TMEM14AQ9Y6G1 99 aa17.24■□□□□ 0.35
USP48-204ENST00000400301 A0A1B0GWA3 101 aa17.24■□□□□ 0.35
USP48-204ENST00000400301 GFOD2Q3B7J2 385 aa17.24■□□□□ 0.35
USP48-204ENST00000400301 DGLUCYQ7Z3D6 616 aa17.24■□□□□ 0.35
USP48-204ENST00000400301 OR2T4Q8NH00 348 aa17.24■□□□□ 0.35
USP48-204ENST00000400301 SLC6A20Q9NP91 592 aa17.24■□□□□ 0.35
USP48-204ENST00000400301 UPB1Q9UBR1 384 aa17.24■□□□□ 0.35
USP48-204ENST00000400301 NOTOA8MTQ0 251 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 MOSPD3O75425 235 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 IFNA7P01567 189 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 IGHA2P01877 340 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 DNASE1P24855 282 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 EIF1AXP47813 144 aaKnown RBP17.23■□□□□ 0.35
USP48-204ENST00000400301 RLN3Q8WXF3 142 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 UCN3Q969E3 161 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 NPIPA5E9PKD4 350 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 PEX12O00623 359 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 MAOBP27338 520 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 RPS5P46782 204 aaKnown RBP17.23■□□□□ 0.35
USP48-204ENST00000400301 CTBP2P56545 445 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 GNG2P59768 71 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 ZNF620Q6ZNG0 422 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 CCDC71Q8IV32 467 aaPredicted RBP17.23■□□□□ 0.35
USP48-204ENST00000400301 OR52N1Q8NH53 320 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 PATE1Q8WXA2 126 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 ZNF707Q96C28 371 aaPredicted RBP17.23■□□□□ 0.35
USP48-204ENST00000400301 SLC25A18Q9H1K4 315 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 NPIPA1Q9UND3 350 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 LOC105369274A0A096LPK9 316 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 EIF1AYO14602 144 aaKnown RBP17.23■□□□□ 0.35
USP48-204ENST00000400301 SDC3O75056 442 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 UCHL1P09936 223 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 RORAP35398 523 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 DNM1P34Q6PK57 102 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 OR4N4Q8N0Y3 316 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 OR6C4Q8NGE1 309 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 ADAMTS18Q8TE60 1221 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 FAM3CQ92520 227 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 SLC38A1Q9H2H9 487 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 C17orf105B2RV13 164 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 ECDO95905 644 aaPredicted RBP17.23■□□□□ 0.35
USP48-204ENST00000400301 PLGP00747 810 aaPredicted RBP17.23■□□□□ 0.35
USP48-204ENST00000400301 MAS1P04201 325 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 TGM1P22735 817 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 PRPS1P60891 318 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 DUSP6Q16828 381 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 ALG10Q5BKT4 473 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 PRR22Q8IZ63 422 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 SIX5Q8N196 739 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 PFN4Q8NHR9 129 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 CNOT9Q92600 299 aaKnown RBP17.23■□□□□ 0.35
USP48-204ENST00000400301 PLA2G12AQ9BZM1 189 aa17.23■□□□□ 0.35
USP48-204ENST00000400301 RBFOX1Q9NWB1 397 aaKnown RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms