RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 SKP2Q13309 424 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 PIN1Q13526 163 aaPredicted RBP12.98□□□□□ -0.33
SKA1-202ENST00000398452 TUBA3CQ13748 450 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 TRAM2Q15035 370 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 OR1Q1Q15612 314 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 OR1C1Q15619 314 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 DCST1Q5T197 706 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 FNDC7Q5VTL7 733 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 WBP2NLQ6ICG8 309 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 TUBA3EQ6PEY2 450 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 ZNF613Q6PF04 617 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 APOOLQ6UXV4 268 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 LINC00471Q8N535 108 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 PSD4Q8NDX1 1056 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 OR5W2Q8NH69 310 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 OR5K1Q8NHB7 308 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 ADAMTS16Q8TE57 1224 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 DNAJA4Q8WW22 397 aaPredicted RBP12.98□□□□□ -0.33
SKA1-202ENST00000398452 SLC38A4Q969I6 547 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 SLC41A3Q96GZ6 507 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 JSRP1Q96MG2 331 aaPredicted RBP12.98□□□□□ -0.33
SKA1-202ENST00000398452 EPYCQ99645 322 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 RNF32Q9H0A6 362 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 KIF17Q9P2E2 1029 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 NKX1-2Q9UD57 310 aaPredicted RBP12.98□□□□□ -0.33
SKA1-202ENST00000398452 RIMS3Q9UJD0 308 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 CHST2Q9Y4C5 530 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 ORC6Q9Y5N6 252 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 KCNMB2Q9Y691 235 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 CHCHD2Q9Y6H1 151 aaPredicted RBP12.98□□□□□ -0.33
SKA1-202ENST00000398452 U3KQV3 271 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 ANKRD33BA6NCL7 494 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 SAC3D1A6NKF1 404 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 ATXN7O15265 892 aaPredicted RBP12.97□□□□□ -0.33
SKA1-202ENST00000398452 SLC25A12O75746 678 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 CCNB2O95067 398 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 CCL3P10147 92 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 CD96P40200 585 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 IDH2P48735 452 aaKnown RBP12.97□□□□□ -0.33
SKA1-202ENST00000398452 ST13P50502 369 aaKnown RBP12.97□□□□□ -0.33
SKA1-202ENST00000398452 HOXC5Q00444 222 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 C19orf57Q0VDD7 668 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 NDUFAF6Q330K2 333 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 BORAQ6PGQ7 559 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 ZBTB49Q6ZSB9 765 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 OFCC1Q8IZS5 231 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 LILRA2Q8N149 483 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 FAM71CQ8NEG0 241 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 OR4D11Q8NGI4 311 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 OR1J4Q8NGS1 313 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 OR52J3Q8NH60 311 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 NRBF2Q96F24 287 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 ZNF597Q96LX8 424 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 ALPK1Q96QP1 1244 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 ANGPTL4Q9BY76 406 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 ANKRD19PQ9H560 264 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 ZNF552Q9H707 407 aaPredicted RBP12.97□□□□□ -0.33
SKA1-202ENST00000398452 NMNAT1Q9HAN9 279 aaPredicted RBP12.97□□□□□ -0.33
SKA1-202ENST00000398452 GALNT9Q9HCQ5 603 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 RHCGQ9UBD6 479 aa12.97□□□□□ -0.33
SKA1-202ENST00000398452 CNOT11Q9UKZ1 510 aaKnown RBP12.97□□□□□ -0.33
SKA1-202ENST00000398452 BOKQ9UMX3 212 aaPredicted RBP12.97□□□□□ -0.33
SKA1-202ENST00000398452 KLF13Q9Y2Y9 288 aaPredicted RBP12.97□□□□□ -0.33
SKA1-202ENST00000398452 ANKUB1A6NFN9 424 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 MKRN2OSH3BPM6 223 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 GNB5O14775 395 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 TPST2O60704 377 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 F10P00742 488 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 PRG2P13727 222 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 CNR1P21554 472 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 ELAVL4P26378 380 aaKnown RBP12.96□□□□□ -0.33
SKA1-202ENST00000398452 VHLP40337 213 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 HTR3AP46098 478 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 ZNF136P52737 540 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 NPTX1Q15818 432 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 LRRC36Q1X8D7 754 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 ALG10BQ5I7T1 473 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 ZNF468Q5VIY5 522 aaPredicted RBP12.96□□□□□ -0.33
SKA1-202ENST00000398452 BICRALQ6AI39 1079 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 OR5M10Q6IEU7 315 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 HMBOX1Q6NT76 420 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 ULK3Q6PHR2 472 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 SHQ1Q6PI26 577 aaKnown RBP12.96□□□□□ -0.33
SKA1-202ENST00000398452 ZNF730Q6ZMV8 503 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 STK32CQ86UX6 486 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 COMTD1Q86VU5 262 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 PLCZ1Q86YW0 608 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 CDK20Q8IZL9 346 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 LSMEM1Q8N8F7 131 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 TMEM178AQ8NBL3 297 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 FAM98AQ8NCA5 519 aaKnown RBP12.96□□□□□ -0.33
SKA1-202ENST00000398452 FDCSPQ8NFU4 85 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 GIPC3Q8TF64 312 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 TMEM41AQ96HV5 264 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 MPP4Q96JB8 637 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 CIB1Q99828 191 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 OSBPL10Q9BXB5 764 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 KLHL4Q9C0H6 718 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 DSN1Q9H410 356 aa12.96□□□□□ -0.33
SKA1-202ENST00000398452 ZNF556Q9HAH1 456 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms