RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 OR2I1PQ8NGU4 316 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 TBC1D15Q8TC07 691 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 LGALS12Q96DT0 336 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 MGLLQ99685 303 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 GPR52Q9Y2T5 361 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 TO15178 435 aa23.16■■□□□ 1.3
SHOX2-201ENST00000389589 ZGLP1P0C6A0 271 aa23.16■■□□□ 1.3
SHOX2-201ENST00000389589 SAGP10523 405 aaPredicted RBP23.16■■□□□ 1.3
SHOX2-201ENST00000389589 TBXA2RP21731 343 aa23.16■■□□□ 1.3
SHOX2-201ENST00000389589 RGS6P49758 472 aa23.16■■□□□ 1.3
SHOX2-201ENST00000389589 NKAIN1Q4KMZ8 207 aa23.16■■□□□ 1.3
SHOX2-201ENST00000389589 HSDL2Q6YN16 418 aa23.16■■□□□ 1.3
SHOX2-201ENST00000389589 C9orf40Q8IXQ3 194 aa23.16■■□□□ 1.3
SHOX2-201ENST00000389589 OR52I1Q8NGK6 324 aa23.16■■□□□ 1.3
SHOX2-201ENST00000389589 ARSGQ96EG1 525 aa23.16■■□□□ 1.3
SHOX2-201ENST00000389589 OR5M11Q96RB7 305 aa23.16■■□□□ 1.3
SHOX2-201ENST00000389589 EXOSC3Q9NQT5 275 aaKnown RBP23.16■■□□□ 1.3
SHOX2-201ENST00000389589 TMEM221A6NGB7 291 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 M0R296 226 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 AIREO43918 545 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 HCN1O60741 890 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 CH25HO95992 272 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 VBP1P61758 197 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 SMARCD3Q6STE5 483 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 BPHLQ86WA6 291 aaPredicted RBP23.15■■□□□ 1.3
SHOX2-201ENST00000389589 SLC43A2Q8N370 569 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 PROKR2Q8NFJ6 384 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 NECAB3Q96P71 396 aaPredicted RBP23.15■■□□□ 1.3
SHOX2-201ENST00000389589 GFM1Q96RP9 751 aaKnown RBP23.15■■□□□ 1.3
SHOX2-201ENST00000389589 CCNL2Q96S94 520 aaPredicted RBP23.15■■□□□ 1.3
SHOX2-201ENST00000389589 WWTR1Q9GZV5 400 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 FGF20Q9NP95 211 aaPredicted RBP23.15■■□□□ 1.3
SHOX2-201ENST00000389589 SIGLEC7Q9Y286 467 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 LSM2Q9Y333 95 aaKnown RBP23.15■■□□□ 1.3
SHOX2-201ENST00000389589 ZDBF2Q9HCK1 2354 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 PRKNO60260 465 aaPredicted RBP23.15■■□□□ 1.3
SHOX2-201ENST00000389589 CLPXO76031 633 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 HSMCR30P0CW71 290 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 UBL4AP11441 157 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 MTNR1AP48039 350 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 LSM3P62310 102 aaKnown RBP23.15■■□□□ 1.3
SHOX2-201ENST00000389589 PSPHP78330 225 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 AADACL4Q5VUY2 407 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 PWWP2BQ6NUJ5 590 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 NANOGP1Q8N7R0 232 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 RNFT2Q96EX2 444 aa23.15■■□□□ 1.3
SHOX2-201ENST00000389589 ONECUT2O95948 504 aa23.14■■□□□ 1.29
SHOX2-201ENST00000389589 CLK1P49759 484 aaKnown RBP23.14■■□□□ 1.29
SHOX2-201ENST00000389589 MLLT10P55197 1068 aa23.14■■□□□ 1.29
SHOX2-201ENST00000389589 FXYD6P3P58550 94 aa23.14■■□□□ 1.29
SHOX2-201ENST00000389589 DCDP81605 110 aaKnown RBP23.14■■□□□ 1.29
SHOX2-201ENST00000389589 NDUFAF6Q330K2 333 aa23.14■■□□□ 1.29
SHOX2-201ENST00000389589 C3orf38Q5JPI3 329 aa23.14■■□□□ 1.29
SHOX2-201ENST00000389589 PPP1R3BQ86XI6 285 aa23.14■■□□□ 1.29
SHOX2-201ENST00000389589 LNX2Q8N448 690 aa23.14■■□□□ 1.29
SHOX2-201ENST00000389589 SLC38A9Q8NBW4 561 aa23.14■■□□□ 1.29
SHOX2-201ENST00000389589 C17orf47Q8NEP4 570 aa23.14■■□□□ 1.29
SHOX2-201ENST00000389589 HSPBAP1Q96EW2 488 aa23.14■■□□□ 1.29
SHOX2-201ENST00000389589 IL20RAQ9UHF4 553 aa23.14■■□□□ 1.29
SHOX2-201ENST00000389589 BHLHE40O14503 412 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 PTP4A3O75365 173 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 RFPL3O75679 317 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 IL12BP29460 328 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 DCTN2Q13561 401 aaKnown RBP23.13■■□□□ 1.29
SHOX2-201ENST00000389589 NXNL2Q5VZ03 156 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 OR13C2Q8NGS9 318 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 NDNFQ8TB73 568 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 FN3KQ9H479 309 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 A0A087WUJ7 227 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 MYL12BO14950 172 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 REM1O75628 298 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 TIAF1O95411 115 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 FUT1P19526 365 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 GADD45AP24522 165 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 CDH11P55287 796 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 NCS1P62166 190 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 C1DQ13901 141 aaKnown RBP23.13■■□□□ 1.29
SHOX2-201ENST00000389589 SPHARQ15513 63 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 PHF19Q5T6S3 580 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 LANCL3Q6ZV70 420 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 PHOSPHO1Q8TCT1 267 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 RPL3LQ92901 407 aaKnown RBP23.13■■□□□ 1.29
SHOX2-201ENST00000389589 ADOQ96SZ5 270 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 CHCHD3Q9NX63 227 aaKnown RBP23.13■■□□□ 1.29
SHOX2-201ENST00000389589 H2AFY2Q9P0M6 372 aaPredicted RBP23.13■■□□□ 1.29
SHOX2-201ENST00000389589 BAIAP2Q9UQB8 552 aa23.13■■□□□ 1.29
SHOX2-201ENST00000389589 GTPBP1O00178 669 aaKnown RBP23.12■■□□□ 1.29
SHOX2-201ENST00000389589 CCRL2O00421 344 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 ZNF264O43296 627 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 HEXBP07686 556 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 MYL12AP19105 171 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 NR0B1P51843 470 aaKnown RBP23.12■■□□□ 1.29
SHOX2-201ENST00000389589 GAS1P54826 345 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 KHDRBS1Q07666 443 aaKnown RBP eCLIP23.12■■□□□ 1.29
SHOX2-201ENST00000389589 SKP2Q13309 424 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 MOGQ16653 247 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 DGUOKQ16854 277 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 WBP2NLQ6ICG8 309 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 OAFQ86UD1 273 aa23.12■■□□□ 1.29
SHOX2-201ENST00000389589 CLEC2DQ9UHP7 191 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms