RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 SLC29A1Q99808 456 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 TPPP3Q9BW30 176 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 CHATP28329 748 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 BMPR1AP36894 532 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 KDELC1Q6UW63 502 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 ABHD11Q8NFV4 315 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 OR9A4Q8NGU2 314 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 GPR148Q8TDV2 347 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 ADAMTS19Q8TE59 1207 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 TAAR8Q969N4 342 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 QRSL1Q9H0R6 528 aaKnown RBP12.87□□□□□ -0.35
COL4A1-201ENST00000375820 A0A0J9YY10 115 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 FANCGO15287 622 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 ITGB2P05107 769 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 GLO1Q04760 184 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 NKAIN2Q5VXU1 208 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 MAMDC4Q6UXC1 1216 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 HOXD1Q9GZZ0 328 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 C19orf12Q9NSK7 152 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 SUSD2Q9UGT4 822 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 RASD1Q9Y272 281 aa12.87□□□□□ -0.35
COL4A1-201ENST00000375820 HOXA11P31270 313 aaPredicted RBP12.86□□□□□ -0.35
COL4A1-201ENST00000375820 CLDN12P56749 244 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 MC2RQ01718 297 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 COQ5Q5HYK3 327 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 Q6ZPB1 254 aaPredicted RBP12.86□□□□□ -0.35
COL4A1-201ENST00000375820 FAM83HQ6ZRV2 1179 aaPredicted RBP12.86□□□□□ -0.35
COL4A1-201ENST00000375820 ZFP90Q8TF47 636 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 TBC1D20Q96BZ9 403 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 BPIFA2Q96DR5 249 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 SAMD10Q9BYL1 202 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 ZNF696Q9H7X3 374 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 TSPAN11A1L157 253 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 ZNF217O75362 1048 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 GK3PQ14409 553 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 SUMF2Q8NBJ7 301 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 OR5D18Q8NGL1 313 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 SLC6A16Q9GZN6 736 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 PELI2Q9HAT8 420 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 INIPQ9NRY2 104 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 EHFQ9NZC4 300 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 VAPAQ9P0L0 249 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 NUMA1Q14980 2115 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 MGST1P10620 155 aaKnown RBP12.86□□□□□ -0.35
COL4A1-201ENST00000375820 DDCP20711 480 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 POU3F1Q03052 451 aaPredicted RBP12.86□□□□□ -0.35
COL4A1-201ENST00000375820 C14orf28Q4W4Y0 310 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 C1orf220Q5T0J3 134 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 NDUFAF7Q7L592 441 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 PINK1Q9BXM7 581 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 MFFQ9GZY8 342 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 PISDQ9UG56 409 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 MCTS1Q9ULC4 181 aaKnown RBP12.86□□□□□ -0.35
COL4A1-201ENST00000375820 A0A1W2PPV4 95 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 MROH6A6NGR9 719 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 A8MXE2 369 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 SDC1P18827 310 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 CTSCP53634 463 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 CLDN6P56747 220 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 AARDQ4LEZ3 155 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 SLC35D2Q76EJ3 337 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 SULF2Q8IWU5 870 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 DNAJC5GQ8N7S2 189 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 ACPTQ9BZG2 426 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 SLC38A1Q9H2H9 487 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 GSTO2Q9H4Y5 243 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 C8orf33Q9H7E9 229 aaPredicted RBP12.86□□□□□ -0.35
COL4A1-201ENST00000375820 COL1A1P02452 1464 aaPredicted RBP12.86□□□□□ -0.35
COL4A1-201ENST00000375820 ABCC6O95255 1503 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 DCTP40126 519 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 VASPP50552 380 aaPredicted RBP12.86□□□□□ -0.35
COL4A1-201ENST00000375820 ILKQ13418 452 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 FGL2Q14314 439 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 LEXMQ3ZCV2 418 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 EID2Q8N6I1 236 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 LIPHQ8WWY8 451 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 OR7D2Q96RA2 312 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 GALNT9Q9HCQ5 603 aa12.86□□□□□ -0.35
COL4A1-201ENST00000375820 PRAMEF27A3QJZ7 478 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 TSFMP43897 325 aaKnown RBP12.85□□□□□ -0.35
COL4A1-201ENST00000375820 PRAMEF9Q5VWM5 478 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 BORAQ6PGQ7 559 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 PIANPQ8IYJ0 282 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 WDSUB1Q8N9V3 476 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 DMBX1Q8NFW5 382 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 RSPRY1Q96DX4 576 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 ZNF443Q9Y2A4 671 aaPredicted RBP12.85□□□□□ -0.35
COL4A1-201ENST00000375820 UPK1BO75841 260 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 CHRNB1P11230 501 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 PODNL1Q6PEZ8 512 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 HORMAD2Q8N7B1 307 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 TMEM181Q9P2C4 612 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 LMO7Q8WWI1 1683 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 SCAF4O95104 1147 aaKnown RBP12.85□□□□□ -0.35
COL4A1-201ENST00000375820 CPOXP36551 454 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 CXADRP78310 365 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 MPP7Q5T2T1 576 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 STEAP2Q8NFT2 490 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 SLC23A2Q9UGH3 650 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 BAZ2AQ9UIF9 1905 aaKnown RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms