RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 TMEM68Q96MH6 324 aa10.72□□□□□ -0.69
PTPRF-203ENST00000372407 RBM24Q9BX46 236 aaKnown RBP10.72□□□□□ -0.69
PTPRF-203ENST00000372407 MAN2C1Q9NTJ4 1040 aa10.72□□□□□ -0.69
PTPRF-203ENST00000372407 TNS1Q9HBL0 1735 aaKnown RBP10.71□□□□□ -0.69
PTPRF-203ENST00000372407 A0A0A6YYH2 397 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 C17orf113A0A1B0GUU1 675 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 GGT3PA6NGU5 568 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 A6NJ64 397 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 HPGDSO60760 199 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 GPR75O95800 540 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 ALDOBP05062 364 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 GYPBP06028 91 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 HLA-FP30511 346 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 PTGER1P34995 402 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 TAS2R31P59538 309 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 KCNJ10P78508 379 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 ACY1Q03154 408 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 MZB1Q8WU39 189 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 TOMM40LQ969M1 308 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 SLC25A18Q9H1K4 315 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 AKAP11Q9UKA4 1901 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 LOC102723532A0A0G2JNH3 316 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 TVP23AA6NH52 213 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 B8ZZF3 427 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 FTCDNL1E5RQL4 147 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 RAD1O60671 282 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 SERPINA5P05154 406 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 HBQ1P09105 142 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 GIFP27352 417 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 P2RY2P41231 377 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 RPS15P62841 145 aaKnown RBP10.71□□□□□ -0.69
PTPRF-203ENST00000372407 CXADRP78310 365 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 EIF2B1Q14232 305 aaKnown RBP10.71□□□□□ -0.69
PTPRF-203ENST00000372407 LEXMQ3ZCV2 418 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 ENTPD8Q5MY95 495 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 Q6ZPB1 254 aaPredicted RBP10.71□□□□□ -0.69
PTPRF-203ENST00000372407 SLC16A9Q7RTY1 509 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 CCDC71LQ8N9Z2 235 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 KCTD12Q96CX2 325 aaKnown RBP10.71□□□□□ -0.69
PTPRF-203ENST00000372407 OR7D2Q96RA2 312 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 RTP3Q9BQQ7 232 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 GON7Q9BXV9 100 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 IL37Q9NZH6 218 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 ADAM29Q9UKF5 820 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 USP22Q9UPT9 525 aa10.71□□□□□ -0.69
PTPRF-203ENST00000372407 H3BML4 177 aa10.71□□□□□ -0.7
PTPRF-203ENST00000372407 LDB3O75112 727 aa10.71□□□□□ -0.7
PTPRF-203ENST00000372407 PTPN6P29350 595 aa10.71□□□□□ -0.7
PTPRF-203ENST00000372407 DEFB103AP81534 67 aa10.71□□□□□ -0.7
PTPRF-203ENST00000372407 GPR50Q13585 617 aa10.71□□□□□ -0.7
PTPRF-203ENST00000372407 OR2G6Q5TZ20 316 aa10.71□□□□□ -0.7
PTPRF-203ENST00000372407 GPR139Q6DWJ6 353 aa10.71□□□□□ -0.7
PTPRF-203ENST00000372407 SGPP2Q8IWX5 399 aa10.71□□□□□ -0.7
PTPRF-203ENST00000372407 L3MBTL4Q8NA19 623 aa10.71□□□□□ -0.7
PTPRF-203ENST00000372407 OR4F15Q8NGB8 312 aa10.71□□□□□ -0.7
PTPRF-203ENST00000372407 C16orf58Q96GQ5 468 aa10.71□□□□□ -0.7
PTPRF-203ENST00000372407 PFDN5Q99471 154 aa10.71□□□□□ -0.7
PTPRF-203ENST00000372407 TIMM29Q9BSF4 260 aa10.71□□□□□ -0.7
PTPRF-203ENST00000372407 TPSD1Q9BZJ3 242 aa10.71□□□□□ -0.7
PTPRF-203ENST00000372407 HSFX1Q9UBD0 423 aa10.71□□□□□ -0.7
PTPRF-203ENST00000372407 SLC6A5Q9Y345 797 aa10.71□□□□□ -0.7
PTPRF-203ENST00000372407 A6NIN4 97 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 HTR3BO95264 441 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 LCATP04180 440 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 BMP4P12644 408 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 IFNGR1P15260 489 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 DAP3P51398 398 aaKnown RBP10.7□□□□□ -0.7
PTPRF-203ENST00000372407 SNU13P55769 128 aaKnown RBP10.7□□□□□ -0.7
PTPRF-203ENST00000372407 NHSL2Q5HYW2 709 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 ZNF529Q6P280 563 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 TSSK4Q6SA08 328 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 METAP1DQ6UB28 335 aaPredicted RBP10.7□□□□□ -0.7
PTPRF-203ENST00000372407 TMEM184AQ6ZMB5 413 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 SPTSSAQ969W0 71 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 PRRT1Q99946 306 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 NELFAQ9H3P2 528 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 KCNIP1Q9NZI2 227 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 GMPR2Q9P2T1 348 aaKnown RBP10.7□□□□□ -0.7
PTPRF-203ENST00000372407 REV1Q9UBZ9 1251 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 TPRP12270 2363 aaKnown RBP10.7□□□□□ -0.7
PTPRF-203ENST00000372407 CRTAPO75718 401 aaPredicted RBP10.7□□□□□ -0.7
PTPRF-203ENST00000372407 ATG12O94817 140 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 CCNJQ5T5M9 372 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 ALKAL1Q6UXT8 129 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 PTRH1Q86Y79 214 aaKnown RBP10.7□□□□□ -0.7
PTPRF-203ENST00000372407 FUNDC1Q8IVP5 155 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 MYLIPQ8WY64 445 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 KHSRPQ92945 711 aaKnown RBP eCLIP10.7□□□□□ -0.7
PTPRF-203ENST00000372407 CASD1Q96PB1 797 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 ADOQ96SZ5 270 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 INIPQ9NRY2 104 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 NAALAD2Q9Y3Q0 740 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 hCG_1807616A0A1W2PRN6 198 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 PRAMEF26H0Y7S4 382 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 SGK494L7N484 410 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 GAPDHSO14556 408 aaPredicted RBP10.7□□□□□ -0.7
PTPRF-203ENST00000372407 ARHGAP33O14559 1287 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 OR7A17O14581 309 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 ADAM12O43184 909 aa10.7□□□□□ -0.7
PTPRF-203ENST00000372407 RAB40ALP0C0E4 278 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms