RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 A0A0X1KG70 313 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 CYR61O00622 381 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 PEX12O00623 359 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 NARSO43776 548 aaKnown RBP13.22□□□□□ -0.29
CD48-201ENST00000368045 FGF17O60258 216 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 SC5DO75845 299 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 NKX2-2O95096 273 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 SERPINA3P01011 423 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 CA3P07451 260 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 SAGP10523 405 aaPredicted RBP13.22□□□□□ -0.29
CD48-201ENST00000368045 PEPDP12955 493 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 ARSBP15848 533 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 SLC6A1P30531 599 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 SLC6A6P31641 620 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 PITPNBP48739 271 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 NRG3P56975 720 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 RPS7P62081 194 aaKnown RBP13.22□□□□□ -0.29
CD48-201ENST00000368045 MAB21L1Q13394 359 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 MADCAM1Q13477 382 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 EFR3AQ14156 821 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 PRICKLE4Q2TBC4 344 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 TMEM196Q5HYL7 178 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 C6orf183Q5T699 404 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 PYHIN1Q6K0P9 492 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 SFXN4Q6P4A7 337 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 ARHGAP11AQ6P4F7 1023 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 ARL9Q6T311 187 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 THSD4Q6ZMP0 1018 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 VASH1Q7L8A9 365 aaPredicted RBP13.22□□□□□ -0.29
CD48-201ENST00000368045 OR4M2Q8NGB6 313 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 ABHD4Q8TB40 342 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 AKAP1Q92667 903 aaKnown RBP eCLIP13.22□□□□□ -0.29
CD48-201ENST00000368045 MYADMQ96S97 322 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 ENKD1Q9H0I2 346 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 LMAN2LQ9H0V9 348 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 ADGRL4Q9HBW9 690 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 MAT2BQ9NZL9 334 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 C2orf16Q68DN1 1984 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 TRAV1-2A0A0B4J238 106 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 A0A0B4J2E0 115 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 A0A1B0GX12 115 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 ZC3H12DA2A288 527 aaKnown RBP13.22□□□□□ -0.29
CD48-201ENST00000368045 H0YGG7 62 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 ZNF24P17028 368 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 FUT1P19526 365 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 SHC1P29353 583 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 ARF3P61204 181 aaPredicted RBP13.22□□□□□ -0.29
CD48-201ENST00000368045 MGAT2Q10469 447 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 GPR176Q14439 515 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 DMKNQ6E0U4 476 aaPredicted RBP13.22□□□□□ -0.29
CD48-201ENST00000368045 B3GLCTQ6Y288 498 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 RTL4Q6ZR62 310 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 RNF44Q7L0R7 432 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 CEACAM19Q7Z692 300 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 OR4M1Q8NGD0 313 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 SMPDL3BQ92485 455 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 CTHRC1Q96CG8 243 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 ART5Q96L15 291 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 TBX5Q99593 518 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 THAP7Q9BT49 309 aaPredicted RBP13.22□□□□□ -0.29
CD48-201ENST00000368045 WACQ9BTA9 647 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 ZNF426Q9BUY5 554 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 BEX2Q9BXY8 128 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 MFRPQ9BY79 579 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 TRIM2Q9C040 744 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 PLSCR3Q9NRY6 295 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 MRPL39Q9NYK5 338 aaKnown RBP13.22□□□□□ -0.29
CD48-201ENST00000368045 RASD1Q9Y272 281 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 BOLA1Q9Y3E2 137 aa13.22□□□□□ -0.29
CD48-201ENST00000368045 A0A0G2JK05 382 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 OR6C74A6NCV1 312 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 ANKRD61A6NGH8 418 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 C2orf74A8MZ97 194 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 DVL2O14641 736 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 DNAJB6O75190 326 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 REM1O75628 298 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 ALX3O95076 343 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 CD1AP06126 327 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 EIF4EP06730 217 aaKnown RBP13.21□□□□□ -0.29
CD48-201ENST00000368045 POLR2CP19387 275 aaPredicted RBP13.21□□□□□ -0.29
CD48-201ENST00000368045 GABRA3P34903 492 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 ID2Q02363 134 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 ZNF85Q03923 595 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 PLA1AQ53H76 456 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 C1QTNF12Q5T7M4 302 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 BAIAP2L2Q6UXY1 529 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 UTS2BQ765I0 119 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 SAMD12Q8N8I0 201 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 BAHD1Q8TBE0 780 aaPredicted RBP13.21□□□□□ -0.29
CD48-201ENST00000368045 OR51V1Q9H2C8 321 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 ERVMER34-1Q9H9K5 563 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 SLC28A3Q9HAS3 691 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 MEPEQ9NQ76 525 aaPredicted RBP13.21□□□□□ -0.29
CD48-201ENST00000368045 FBXO34Q9NWN3 711 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 SERTAD3Q9UJW9 196 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 ZMIZ1Q9ULJ6 1067 aa13.21□□□□□ -0.29
CD48-201ENST00000368045 LOC105369274A0A096LPK9 316 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 LOC102723532A0A0G2JNH3 316 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 A0A1W2PQF6 199 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 E9PI62 339 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms