RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 SKP2Q13309 424 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 TESK1Q15569 626 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 SLC25A53Q5H9E4 307 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 EPGNQ6UW88 154 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 FRRS1Q6ZNA5 592 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 FAM214BQ7L5A3 538 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 TMCO5AQ8N6Q1 288 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 ZNF610Q8N9Z0 462 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 GLB1L3Q8NCI6 653 aaPredicted RBP16.46■□□□□ 0.23
CLN3-202ENST00000355477 ATP6V1C2Q8NEY4 427 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 TOR1AIP2Q8NFQ8 470 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 OSTF1Q92882 214 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 THUMPD3Q9BV44 507 aaKnown RBP16.46■□□□□ 0.23
CLN3-202ENST00000355477 SAP130Q9H0E3 1048 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 SLCO1B3Q9NPD5 702 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 SDR39U1Q9NRG7 319 aaPredicted RBP16.46■□□□□ 0.23
CLN3-202ENST00000355477 PAQR5Q9NXK6 330 aaPredicted RBP16.46■□□□□ 0.23
CLN3-202ENST00000355477 USH1CQ9Y6N9 552 aa16.46■□□□□ 0.23
CLN3-202ENST00000355477 PRRC2AP48634 2157 aaKnown RBP16.45■□□□□ 0.22
CLN3-202ENST00000355477 SH3D21A4FU49 640 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 UBDO15205 165 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 CYP7B1O75881 506 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 CSTAP01040 98 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 IL6P05231 212 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 UBTFL6P0CB48 400 aaPredicted RBP16.45■□□□□ 0.22
CLN3-202ENST00000355477 NID1P14543 1247 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 ELK4P28324 431 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 CHRNEQ04844 493 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 CBFBQ13951 182 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 FGFBP1Q14512 234 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 QPRTQ15274 297 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 SYPL1Q16563 259 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 GSTA3Q16772 222 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 TMEM176BQ3YBM2 270 aaPredicted RBP16.45■□□□□ 0.22
CLN3-202ENST00000355477 GPAT3Q53EU6 434 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 COX20Q5RI15 118 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 CDC20BQ86Y33 519 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 OR9I1Q8NGQ6 314 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 PNPT1Q8TCS8 783 aaKnown RBP16.45■□□□□ 0.22
CLN3-202ENST00000355477 ROBO4Q8WZ75 1007 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 MRGPRX4Q96LA9 322 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 DACH2Q96NX9 599 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 SRXN1Q9BYN0 137 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 POLE3Q9NRF9 147 aa16.45■□□□□ 0.22
CLN3-202ENST00000355477 MCTS1Q9ULC4 181 aaKnown RBP16.45■□□□□ 0.22
CLN3-202ENST00000355477 ETV2O00321 342 aaPredicted RBP16.44■□□□□ 0.22
CLN3-202ENST00000355477 SS18L1O75177 396 aaPredicted RBP16.44■□□□□ 0.22
CLN3-202ENST00000355477 SYNGR4O95473 234 aa16.44■□□□□ 0.22
CLN3-202ENST00000355477 H6PDO95479 791 aa16.44■□□□□ 0.22
CLN3-202ENST00000355477 CD8BP10966 210 aa16.44■□□□□ 0.22
CLN3-202ENST00000355477 PGM1P36871 562 aa16.44■□□□□ 0.22
CLN3-202ENST00000355477 CD79BP40259 229 aa16.44■□□□□ 0.22
CLN3-202ENST00000355477 LRRC74AQ0VAA2 488 aa16.44■□□□□ 0.22
CLN3-202ENST00000355477 EIF3MQ7L2H7 374 aaKnown RBP16.44■□□□□ 0.22
CLN3-202ENST00000355477 ZNF619Q8N2I2 560 aa16.44■□□□□ 0.22
CLN3-202ENST00000355477 TRIML2Q8N7C3 387 aa16.44■□□□□ 0.22
CLN3-202ENST00000355477 ANKFN1Q8N957 763 aa16.44■□□□□ 0.22
CLN3-202ENST00000355477 GMPPAQ96IJ6 420 aaPredicted RBP16.44■□□□□ 0.22
CLN3-202ENST00000355477 C7orf26Q96N11 449 aa16.44■□□□□ 0.22
CLN3-202ENST00000355477 QRSL1Q9H0R6 528 aaKnown RBP16.44■□□□□ 0.22
CLN3-202ENST00000355477 ZIM2Q9NZV7 527 aa16.44■□□□□ 0.22
CLN3-202ENST00000355477 PROCRQ9UNN8 238 aa16.44■□□□□ 0.22
CLN3-202ENST00000355477 CLDN24A6NM45 220 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 RFXANKO14593 260 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 PLGP00747 810 aaPredicted RBP16.43■□□□□ 0.22
CLN3-202ENST00000355477 CHRM4P08173 479 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 PCYT1AP49585 367 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 POLR2JP52435 117 aaKnown RBP16.43■□□□□ 0.22
CLN3-202ENST00000355477 SESN3P58005 492 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 PLAURQ03405 335 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 TIGD2Q4W5G0 525 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 PDSS1Q5T2R2 415 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 DNAJC14Q6Y2X3 702 aaPredicted RBP16.43■□□□□ 0.22
CLN3-202ENST00000355477 FAM71CQ8NEG0 241 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 LRRC8CQ8TDW0 803 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 ZFP90Q8TF47 636 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 VPS33AQ96AX1 596 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 WFIKKN1Q96NZ8 548 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 SLC38A1Q9H2H9 487 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 COQ10BQ9H8M1 238 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 PLSCR4Q9NRQ2 329 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 ELOVL5Q9NYP7 299 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 TESMINQ9Y4I5 508 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 ROS1P08922 2347 aa16.43■□□□□ 0.22
CLN3-202ENST00000355477 POU2F1P14859 743 aa16.42■□□□□ 0.22
CLN3-202ENST00000355477 H2AFXP16104 143 aaPredicted RBP16.42■□□□□ 0.22
CLN3-202ENST00000355477 CCKARP32238 428 aa16.42■□□□□ 0.22
CLN3-202ENST00000355477 UGT2B10P36537 528 aa16.42■□□□□ 0.22
CLN3-202ENST00000355477 IDH3AP50213 366 aa16.42■□□□□ 0.22
CLN3-202ENST00000355477 MVDP53602 400 aa16.42■□□□□ 0.22
CLN3-202ENST00000355477 IST1P53990 364 aa16.42■□□□□ 0.22
CLN3-202ENST00000355477 CTBP2P56545 445 aa16.42■□□□□ 0.22
CLN3-202ENST00000355477 MAPK11Q15759 364 aa16.42■□□□□ 0.22
CLN3-202ENST00000355477 ZNF239Q16600 458 aaKnown RBP16.42■□□□□ 0.22
CLN3-202ENST00000355477 C22orf34Q6ZV56 151 aa16.42■□□□□ 0.22
CLN3-202ENST00000355477 HDXQ7Z353 690 aa16.42■□□□□ 0.22
CLN3-202ENST00000355477 MIER2Q8N344 545 aa16.42■□□□□ 0.22
CLN3-202ENST00000355477 OR6K3Q8NGY3 331 aa16.42■□□□□ 0.22
CLN3-202ENST00000355477 TRNT1Q96Q11 434 aaKnown RBP16.42■□□□□ 0.22
CLN3-202ENST00000355477 EBF4Q9BQW3 602 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms