RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 CCDC177Q9NQR7 707 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 INIPQ9NRY2 104 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 TMEM140Q9NV12 185 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 FBXL12Q9NXK8 326 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 IL20Q9NYY1 176 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 TMEM9Q9P0T7 183 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 PPP4R1LQ9P1A2 415 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 ANKMY1Q9P2S6 941 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 ZNF282Q9UDV7 671 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 CLEC2DQ9UHP7 191 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 ZDHHC8Q9ULC8 765 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 TBC1D24Q9ULP9 559 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 ENPP4Q9Y6X5 453 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 COL12A1Q99715 3063 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 TPRP12270 2363 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 GPR179Q6PRD1 2367 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 A0A1W2PPW3 197 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 WIPF3A6NGB9 483 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 METTL15A6NJ78 407 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 CLCA1A8K7I4 914 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 TOR1BO14657 336 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 DNPH1O43598 174 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SSX4O60224 188 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 PRKNO60260 465 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 CSO75390 466 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 CIB2O75838 187 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 KCNK2O95069 426 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 NKX2-2O95096 273 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 NADKO95544 446 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 KLF8O95600 359 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 OPN1SWP03999 348 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 CSTBP04080 98 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 CSF2P04141 144 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 FABP3P05413 133 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 LCKP06239 509 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 FUT1P19526 365 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 BTF3P20290 206 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 MAKP20794 623 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 GALNSP34059 522 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 MAGEA8P43361 318 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 ASMTP46597 345 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 RFX2P48378 723 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 FAM3BP58499 235 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 TDGQ13569 410 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SCARB2Q14108 478 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 GGTLC2Q14390 218 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 HABP2Q14520 560 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 DUSP5Q16690 384 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SYT14P1Q58G82 188 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 ZNF776Q68DI1 518 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 RAET1GQ6H3X3 334 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 ERICH5Q6P6B1 374 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SPESP1Q6UW49 350 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SSX6Q7RTT6 188 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 C6orf120Q7Z4R8 191 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 NKAIN4Q8IVV8 208 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SYTL1Q8IYJ3 562 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 HDDC3Q8N4P3 179 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 C2orf73Q8N5S3 287 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 NANOGP1Q8N7R0 232 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 LSMEM1Q8N8F7 131 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 ZPLD1Q8TCW7 415 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 MAGEE2Q8TD90 523 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 MCOLN3Q8TDD5 553 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 BRIX1Q8TDN6 353 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 ZNF721Q8TF20 911 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SSC4DQ8WTU2 575 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SMPDL3AQ92484 453 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 HSD17B8Q92506 261 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 FIG4Q92562 907 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 PTP4A1Q93096 173 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SH3YL1Q96HL8 342 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 RNF170Q96K19 258 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 OR14A2Q96R54 314 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 PIP5K1AQ99755 562 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 BCL7BQ9BQE9 202 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 HAUS8Q9BT25 410 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 TBCDQ9BTW9 1192 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 PTDSS2Q9BVG9 487 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SEMA4CQ9C0C4 833 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 MCCC2Q9HCC0 563 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 LYRM4Q9HD34 91 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 FGF20Q9NP95 211 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 FANCFQ9NPI8 374 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 RXFP3Q9NSD7 469 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 OR6C2Q9NZP2 312 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SH3BP4Q9P0V3 963 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SCML1Q9UN30 329 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SATB2Q9UPW6 733 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 KCNK6Q9Y257 313 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 EIF3LQ9Y262 564 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 TDRKHQ9Y2W6 561 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 LYSTQ99698 3801 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 ESPL1Q14674 2120 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 AHCTF1Q8WYP5 2266 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 FBN2P35556 2912 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 IGHV5-51A0A0C4DH38 117 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 A0A1W2PRX2 142 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 EFNA2O43921 213 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 CBFA2T3O75081 653 aa2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms