RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 TMPRSS11DO60235 418 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 CREBL2O60519 120 aaPredicted RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 TBX19O60806 448 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 ADAM11O75078 769 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 EGFP01133 1207 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 MT-ND5P03915 603 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 ATP1B1P05026 303 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 VSIG10L2P0DP72 767 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 IL9P15248 144 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 ZNF19P17023 458 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 CD53P19397 219 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 PPP2R1BP30154 601 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 IFNGR2P38484 337 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 STAT5AP42229 794 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 RECQLP46063 649 aaPredicted RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 ERVK-25P63136 954 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 ZNF85Q03923 595 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 GPNMBQ14956 572 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 MAPK14Q16539 360 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 SPOUT1Q5T280 376 aaKnown RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 DCAF12L2Q5VW00 463 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 DMKNQ6E0U4 476 aaPredicted RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 FAM199XQ6PEV8 388 aaPredicted RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 MEPCEQ7L2J0 689 aaKnown RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 ADCK2Q7Z695 626 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 VRK2Q86Y07 508 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 HDDC3Q8N4P3 179 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 C2orf73Q8N5S3 287 aaPredicted RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 AMER3Q8N944 861 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 TEX19Q8NA77 164 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 CHST14Q8NCH0 376 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 BPIFCQ8NFQ6 507 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 FANK1Q8TC84 345 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 TMEM255BQ8WV15 326 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 SLC25A28Q96A46 364 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 SLC25A38Q96DW6 304 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 UTP23Q9BRU9 249 aaKnown RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 RIOK2Q9BVS4 552 aaKnown RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 FXYD6Q9H0Q3 95 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 ZNF768Q9H5H4 540 aaKnown RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 BARX1Q9HBU1 254 aaPredicted RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 ANKRD10Q9NXR5 420 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 ABRACLQ9P1F3 81 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 SLC45A1Q9Y2W3 748 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 AK6Q9Y3D8 172 aaKnown RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 MTCL1Q9Y4B5 1905 aaKnown RBP6.3□□□□□ -1.4
VPS39-202ENST00000348544 PLXNA2O75051 1894 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 TRAV1-2A0A0B4J238 106 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 PRSS44E7EML9 344 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 ZNF35P13682 527 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 TYRP14679 529 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 TYRP1P17643 537 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 PAICSP22234 425 aaKnown RBP6.3□□□□□ -1.4
VPS39-202ENST00000348544 MPGP29372 298 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 DCTDP32321 178 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 UBE2MP61081 183 aaKnown RBP6.3□□□□□ -1.4
VPS39-202ENST00000348544 S100A12P80511 92 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 MC2RQ01718 297 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 TAF12Q16514 161 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 ZNF658BQ4V348 819 aaPredicted RBP6.3□□□□□ -1.4
VPS39-202ENST00000348544 FAM74A1Q5RGS3 127 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 C18orf63Q68DL7 685 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 FUT10Q6P4F1 479 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 BAIAP2L2Q6UXY1 529 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 SSX6Q7RTT6 188 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 METTL3Q86U44 580 aaKnown RBP6.3□□□□□ -1.4
VPS39-202ENST00000348544 SLC44A3Q8N4M1 653 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 OR2T33Q8NG76 320 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 SUN3Q8TAQ9 357 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 STK35Q8TDR2 534 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 ASB12Q8WXK4 309 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 OVCA2Q8WZ82 227 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 NSMAFQ92636 917 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 ORAI1Q96D31 301 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 IL17FQ96PD4 163 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 GFI1Q99684 422 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 ARHGDIGQ99819 225 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 PTPN18Q99952 460 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 NDC1Q9BTX1 674 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 PINK1Q9BXM7 581 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 TTTY10Q9BZA0 68 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 GLIPR2Q9H4G4 154 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 ZCCHC3Q9NUD5 404 aaKnown RBP6.3□□□□□ -1.4
VPS39-202ENST00000348544 CYB5R1Q9UHQ9 305 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 ST6GALNAC2Q9UJ37 374 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 CASP8AP2Q9UKL3 1982 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 MAGEB4O15481 346 aaPredicted RBP6.3□□□□□ -1.4
VPS39-202ENST00000348544 FLRT2O43155 660 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 PRKRAO75569 313 aaKnown RBP6.3□□□□□ -1.4
VPS39-202ENST00000348544 UCHL1P09936 223 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 CLUP10909 449 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 NDUFV2P19404 249 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 MAT2AP31153 395 aaKnown RBP6.3□□□□□ -1.4
VPS39-202ENST00000348544 PYCR1P32322 319 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 ADH7P40394 386 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 SLC11A1P49279 550 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 PRLHRP49683 370 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 PRKAG1P54619 331 aa6.3□□□□□ -1.4
VPS39-202ENST00000348544 POLR2GP62487 172 aaKnown RBP eCLIP6.3□□□□□ -1.4
VPS39-202ENST00000348544 RPS15P62841 145 aaKnown RBP6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms