RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 OR13C2Q8NGS9 318 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 MRPS18AQ9NVS2 196 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TGFB1I1O43294 461 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ZP3P21754 424 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF81P51508 661 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 NAAAQ02083 359 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 PARP15Q460N3 678 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TNFAIP8L2Q6P589 184 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 LCLAT1Q6UWP7 414 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TRAPPC5Q8IUR0 188 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 OR2D3Q8NGH3 330 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 OR14A2Q96R54 314 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 PITX2Q99697 317 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CMSS1Q9BQ75 279 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 OR2S2Q9NQN1 319 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 B4DEV8 164 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 FARS2O95363 451 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 IGFBP4P22692 258 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CD1CP29017 333 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 GP2P55259 537 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ARHGAP15Q53QZ3 475 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 FBXO47Q5MNV8 452 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 SLC22A25Q6T423 547 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 GDPD3Q7L5L3 318 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 VRK2Q86Y07 508 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ARMC10Q8N2F6 343 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 PACRGQ96M98 296 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 GPR21Q99679 349 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 FZD10Q9ULW2 581 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 HCN4Q9Y3Q4 1203 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TLX2O43763 284 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ENTPD3O75355 529 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CD3GP09693 182 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 SLC6A2P23975 617 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CLCN7P51798 805 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 LTC4SQ16873 150 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 FAM183BPQ6ZVS7 135 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 OR8J1Q8NGP2 316 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF384Q8TF68 577 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ECHDC3Q96DC8 303 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 DCAF13Q9NV06 445 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CBLCQ9ULV8 474 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 RIPK3Q9Y572 518 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CTSOP43234 321 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 LSSP48449 732 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 DSC2Q02487 901 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 C9orf135Q5VTT2 229 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 SDCBP2Q9H190 292 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 SMURF1Q9HCE7 757 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 GBA2Q9HCG7 927 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TNFSF13BQ9Y275 285 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 RFPL4AA6NLU0 287 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 RFPL4AL1F8VTS6 287 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 M0R2Z0 102 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 SLC28A1O00337 649 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF195O14628 629 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ENGP17813 658 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 RPS19P39019 145 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CD47Q08722 323 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 IQCCQ4KMZ1 466 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 STEAP3Q658P3 488 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF547Q8IVP9 402 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TUSC5Q8IXB3 177 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 STT3BQ8TCJ2 826 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 IKZF3Q9UKT9 509 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TAAR5O14804 337 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 DCLK1O15075 740 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF169Q14929 603 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 PLAG1Q6DJT9 500 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TEX261Q6UWH6 196 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 PTGR2Q8N8N7 351 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TMEM125Q96AQ2 219 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 GAL3ST4Q96RP7 486 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 RHNO1Q9BSD3 238 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CENPMQ9NSP4 180 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 NDRG4Q9ULP0 352 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 VWA7Q9Y334 891 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 U3KQ87 197 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 LOC730098B7Z3J9 87 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 J3KR12 359 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 NDUFA2O43678 99 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 DLX3O60479 287 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 OLFM2O95897 454 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 TPMTP51580 245 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 CRYZQ08257 329 aaKnown RBP3.32□□□□□ -1.88
SYNE1-201ENST00000341594 PLK5Q496M5 336 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 C15orf39Q6ZRI6 1047 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 RTN4RL1Q86UN2 441 aaPredicted RBP3.32□□□□□ -1.88
SYNE1-201ENST00000341594 OR10H4Q8NGA5 316 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 MGAT4CQ9UBM8 478 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 RNF6Q9Y252 685 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 MSRB2Q9Y3D2 182 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 P2RX6O15547 441 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 OMGP23515 440 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 HOXC12P31275 282 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 PSPHP78330 225 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 ILKQ13418 452 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 RPS26P11Q5JNZ5 115 aaPredicted RBP3.32□□□□□ -1.88
SYNE1-201ENST00000341594 HUS1BQ8NHY5 278 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms