RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 GPR176Q14439 515 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 CPZQ66K79 652 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 FAM213BQ8TBF2 198 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 RBM24Q9BX46 236 aaKnown RBP13.06□□□□□ -0.32
CSPG4-201ENST00000308508 STYXL1Q9Y6J8 313 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 CHD4Q14839 1912 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 PRICKLE3O43900 615 aaPredicted RBP13.06□□□□□ -0.32
CSPG4-201ENST00000308508 LYPD4Q6UWN0 246 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 BPIFB2Q8N4F0 458 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 OR9K2Q8NGE7 335 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 OR9A2Q8NGT5 310 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 RBPMSQ93062 196 aaKnown RBP13.06□□□□□ -0.32
CSPG4-201ENST00000308508 PRRC1Q96M27 445 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 SLC22A7Q9Y694 548 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 DUX1O43812 170 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 MS4A2Q01362 244 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 HEPHL1Q6MZM0 1159 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 FAM111BQ6SJ93 734 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 B3GNT8Q7Z7M8 397 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 SIAH1Q8IUQ4 282 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 KLHDC8AQ8IYD2 350 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 EMC7Q9NPA0 242 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 PURGQ9UJV8 347 aaKnown RBP13.06□□□□□ -0.32
CSPG4-201ENST00000308508 GMEB2Q9UKD1 530 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 LOC102725191A0A1B0GVB3 256 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 F5H5K5 113 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 CASP6P55212 293 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 WDR5P61964 334 aaKnown RBP13.06□□□□□ -0.32
CSPG4-201ENST00000308508 FAM69BQ5VUD6 431 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 FAM122BQ7Z309 247 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 NAGSQ8N159 534 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 C15orf54Q8N8G6 183 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 ANKRD30BLA7E2S9 258 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 HIDE1A8MVS5 230 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 TNFRSF10AO00220 468 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 GPR37L1O60883 481 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 CPNE6O95741 557 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 METTL15P1P0C7V9 234 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 EEF1A1P68104 462 aaKnown RBP13.06□□□□□ -0.32
CSPG4-201ENST00000308508 OR4N5Q8IXE1 308 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 NPRL2Q8WTW4 380 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 SMOQ99835 787 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 WRAP73Q9P2S5 460 aaPredicted RBP13.06□□□□□ -0.32
CSPG4-201ENST00000308508 PRSS44E7EML9 344 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 FBXO45P0C2W1 286 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 ELK1P19419 428 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 SRPXP78539 464 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 TAS1R3Q7RTX0 852 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 ASB17Q8WXJ9 295 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 C1QTNF2Q9BXJ5 285 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 FGF4P08620 206 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 LIPCP11150 499 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 SEMA6DQ8NFY4 1073 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 TMEM163Q8TC26 289 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 TMEM239Q8WW34 195 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 EVA1AQ9H8M9 152 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 HHLA2Q9UM44 414 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 TGM5O43548 720 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 RING1Q06587 406 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 LANCL3Q6ZV70 420 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 ANKRD9Q96BM1 317 aaPredicted RBP13.05□□□□□ -0.32
CSPG4-201ENST00000308508 HIPK2Q9H2X6 1198 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 RCE1Q9Y256 329 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 DUOX1Q9NRD9 1551 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 B3GALNT1O75752 331 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 ACP2P11117 423 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 ERVPABLB-1P60509 514 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 PIN1Q13526 163 aaPredicted RBP13.05□□□□□ -0.32
CSPG4-201ENST00000308508 SPCS2Q15005 226 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 SLC30A3Q99726 388 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 KCNIP2Q9NS61 270 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 A0A0B4J2A0 478 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 CCDC85CA6NKD9 419 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 B4GAT1O43505 415 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 DFFBO76075 338 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 TAGLN2P37802 199 aaKnown RBP13.05□□□□□ -0.32
CSPG4-201ENST00000308508 GRM7Q14831 915 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 BPHLQ86WA6 291 aaPredicted RBP13.05□□□□□ -0.32
CSPG4-201ENST00000308508 FUBP1Q96AE4 644 aaKnown RBP13.05□□□□□ -0.32
CSPG4-201ENST00000308508 PRR11Q96HE9 360 aaPredicted RBP13.05□□□□□ -0.32
CSPG4-201ENST00000308508 CASD1Q96PB1 797 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 SHPKQ9UHJ6 478 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 EXO1Q9UQ84 846 aaKnown RBP13.05□□□□□ -0.32
CSPG4-201ENST00000308508 WNT6Q9Y6F9 365 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 M0R3H8 397 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 LEFTY2O00292 366 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 SBK2P0C263 348 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 TNK1Q13470 666 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 CYB561A3Q8NBI2 242 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 SLC29A1Q99808 456 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 RIMS1Q86UR5 1692 aaKnown RBP13.05□□□□□ -0.32
CSPG4-201ENST00000308508 GPR39O43194 453 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 DDCP20711 480 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 TNFSF4P23510 183 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 NSDHLQ15738 373 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 NRG4Q8WWG1 115 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 GAB3Q8WWW8 586 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 IER3IP1Q9Y5U9 82 aa13.05□□□□□ -0.32
CSPG4-201ENST00000308508 GABRPO00591 440 aa13.04□□□□□ -0.32
CSPG4-201ENST00000308508 ARHGAP33O14559 1287 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms