RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 OR5L2Q8NGL0 311 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 OR1J1Q8NGS3 322 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 CYP2W1Q8TAV3 490 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ORAI1Q96D31 301 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 TCTN2Q96GX1 697 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 THOC3Q96J01 351 aaKnown RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 TECTBQ96PL2 329 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 GLIS2Q9BZE0 524 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 BRF2Q9HAW0 419 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 LHX9Q9NQ69 397 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 SOHLH2Q9NX45 425 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 TVP23BQ9NYZ1 205 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 PCDHB1Q9Y5F3 818 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 A0A1B0GVC2 190 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 A6NIN4 97 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 TMEM88BA6NKF7 163 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 AQP7O14520 342 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 NXPH2O95156 264 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 UBL3O95164 117 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 TXNP10599 105 aaKnown RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 PIPP12273 146 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 RPA2P15927 270 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 RCC1P18754 421 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 HOXA13P31271 388 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 CD200P41217 278 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 SUCLG1P53597 346 aaKnown RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 CRISP1P54107 249 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 F2RL1P55085 397 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 CLDN8P56748 225 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 BOP1Q14137 746 aaKnown RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 TMEM132DQ14C87 1099 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 IFI44LQ53G44 452 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 TMEM201Q5SNT2 666 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 COL5A1-AS1Q5SY13 56 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 NKAIN2Q5VXU1 208 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 DOK6Q6PKX4 331 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ANGPTL5Q86XS5 388 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 GPSM1Q86YR5 675 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ARL14Q8N4G2 192 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 SLC5A8Q8N695 610 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 REPS2Q8NFH8 660 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 OR6J1Q8NGC5 347 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 METTL21AQ8WXB1 218 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 AUTS2Q8WXX7 1259 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 MR1Q95460 341 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 AKT1S1Q96B36 256 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 RGMAQ96B86 450 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 RAB39BQ96DA2 213 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 SMIM12Q96EX1 92 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 SERINC2Q96SA4 455 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 CPPED1Q9BRF8 314 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 GSTO2Q9H4Y5 243 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 BCAS3Q9H6U6 928 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 DNAJC4Q9NNZ3 241 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 SLCO1C1Q9NYB5 712 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ZDHHC8Q9ULC8 765 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 PCDHA10Q9Y5I2 948 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 CD8B2A6NJW9 211 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 RNASEK-C17orf49H0YIS7 233 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 WNT9AO14904 365 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 FLRT2O43155 660 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 BCL2L11O43521 198 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 NCR1O76036 304 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 OPN1MWP04001 364 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 STAG3L3P0CL85 134 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 OPN1MW2P0DN77 364 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 OPN1MW3P0DN78 364 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 CD8BP10966 210 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 DRD2P14416 443 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 GABRA5P31644 462 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 RPS25P62851 125 aaKnown RBP5.38□□□□□ -1.55
SCN1A-216ENST00000637968 MAP2K5Q13163 448 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 ARL6IP1Q15041 203 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 UNC50Q53HI1 259 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 BEX5Q5H9J7 111 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 HECTD2Q5U5R9 776 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 RGMBQ6NW40 437 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF534Q76KX8 674 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 FAM26EQ8N5C1 309 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 OR4E2Q8NGC2 313 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 OR8J1Q8NGP2 316 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 ASB13Q8WXK3 278 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 SORCS1Q8WY21 1168 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 MRPL38Q96DV4 380 aaKnown RBP5.38□□□□□ -1.55
SCN1A-216ENST00000637968 F2RL3Q96RI0 385 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 PBDC1Q9BVG4 233 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 GABARAPL3Q9BY60 117 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 ACTRT3Q9BYD9 372 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 PCBD2Q9H0N5 130 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 RHOFQ9HBH0 211 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 SUSD2Q9UGT4 822 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 TP53BP1Q12888 1972 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-216ENST00000637968 ZFC3H1O60293 1989 aaKnown RBP5.38□□□□□ -1.55
SCN1A-216ENST00000637968 UBR1Q8IWV7 1749 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 M0R129 80 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 ONECUT3O60422 494 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-216ENST00000637968 SOCS5O75159 536 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 TSPAN15O95858 294 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 RPN2P04844 631 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 IL1RNP18510 177 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms