RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 EFNA1P20827 205 aaPredicted RBP17.19■□□□□ 0.34
CLN3-262ENST00000637699 ELK4P28324 431 aa17.19■□□□□ 0.34
CLN3-262ENST00000637699 LCN1P31025 176 aa17.19■□□□□ 0.34
CLN3-262ENST00000637699 FAM153CQ494X1 144 aa17.19■□□□□ 0.34
CLN3-262ENST00000637699 CBLN3Q6UW01 205 aa17.19■□□□□ 0.34
CLN3-262ENST00000637699 LRIG3Q6UXM1 1119 aa17.19■□□□□ 0.34
CLN3-262ENST00000637699 TDRPQ86YL5 185 aa17.19■□□□□ 0.34
CLN3-262ENST00000637699 ZNF775Q96BV0 537 aaPredicted RBP17.19■□□□□ 0.34
CLN3-262ENST00000637699 TRIM44Q96DX7 344 aaPredicted RBP17.19■□□□□ 0.34
CLN3-262ENST00000637699 REEP4Q9H6H4 257 aa17.19■□□□□ 0.34
CLN3-262ENST00000637699 COQ10BQ9H8M1 238 aa17.19■□□□□ 0.34
CLN3-262ENST00000637699 FAIMQ9NVQ4 179 aa17.19■□□□□ 0.34
CLN3-262ENST00000637699 GIN1Q9NXP7 522 aa17.19■□□□□ 0.34
CLN3-262ENST00000637699 PRSS50Q9UI38 385 aa17.19■□□□□ 0.34
CLN3-262ENST00000637699 B3GALT5Q9Y2C3 310 aa17.19■□□□□ 0.34
CLN3-262ENST00000637699 PTGDR2Q9Y5Y4 395 aa17.19■□□□□ 0.34
CLN3-262ENST00000637699 FAM234BA2RU67 622 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 GJE1A6NN92 205 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 SHISA9B4DS77 424 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 G3V2L1 256 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 FAM157CP0CG43 387 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 MYL2P10916 166 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 NUDT6P53370 316 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 CDH11P55287 796 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 POU6F2P78424 691 aaPredicted RBP17.18■□□□□ 0.34
CLN3-262ENST00000637699 PPA1Q15181 289 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 TOMM34Q15785 309 aaPredicted RBP17.18■□□□□ 0.34
CLN3-262ENST00000637699 C6orf52Q5T4I8 152 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 Q6ZT83 130 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 DTX2Q86UW9 622 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 SLC43A2Q8N370 569 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 OR2W6PQ8NHA6 318 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 CLHC1Q8NHS4 586 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 ZFP90Q8TF47 636 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 CCDC126Q96EE4 140 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 TSSK3Q96PN8 268 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 CXorf36Q9H7Y0 433 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 C1orf109Q9NX04 203 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 BAIAP2L1Q9UHR4 511 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 EMCNQ9ULC0 261 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 CARD8Q9Y2G2 431 aa17.18■□□□□ 0.34
CLN3-262ENST00000637699 NPIPA5A0A0B4J1W7 369 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 A0A1W2PNR3 127 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 NPIPA7E9PJI5 369 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 ABCD4O14678 606 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 ABHD2P08910 425 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 NPIPA8P0DM63 369 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 OR3A2P47893 321 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 NRF1Q16656 503 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 CFAP157Q5JU67 520 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 AGAP6Q5VW22 663 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 CLEC6AQ6EIG7 209 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 ZCCHC12Q6PEW1 402 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 ZYG11AQ6WRX3 759 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 FRMD7Q6ZUT3 714 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 ZC3HAV1Q7Z2W4 902 aaKnown RBP17.17■□□□□ 0.34
CLN3-262ENST00000637699 MTERF4Q7Z6M4 381 aaKnown RBP17.17■□□□□ 0.34
CLN3-262ENST00000637699 ACMSDQ8TDX5 336 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 CDS1Q92903 461 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 MUCL1Q96DR8 90 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 ZNF764Q96H86 408 aaPredicted RBP17.17■□□□□ 0.34
CLN3-262ENST00000637699 METTL2AQ96IZ6 378 aaKnown RBP17.17■□□□□ 0.34
CLN3-262ENST00000637699 BTBD2Q9BX70 525 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 TXLNGYQ9BZA5 131 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 GRIP2Q9C0E4 1043 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 ACSS1Q9NUB1 689 aaPredicted RBP17.17■□□□□ 0.34
CLN3-262ENST00000637699 KLHL9Q9P2J3 617 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 DCDC2Q9UHG0 476 aa17.17■□□□□ 0.34
CLN3-262ENST00000637699 GPC6Q9Y625 555 aaPredicted RBP17.17■□□□□ 0.34
CLN3-262ENST00000637699 NPIPB8E9PQR5 432 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 H3BQF6 201 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 GTPBP1O00178 669 aaKnown RBP17.16■□□□□ 0.34
CLN3-262ENST00000637699 SLC28A1O00337 649 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 RIPK2O43353 540 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 TBX19O60806 448 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 UROSP10746 265 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 SDC1P18827 310 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 ATP6V1C1P21283 382 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 PRPH2P23942 346 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 EDNRAP25101 427 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 SLC7A1P30825 629 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 FRKP42685 505 aaPredicted RBP17.16■□□□□ 0.34
CLN3-262ENST00000637699 P2RX1P51575 399 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 IRX1P78414 480 aaPredicted RBP17.16■□□□□ 0.34
CLN3-262ENST00000637699 TMEM249Q2WGJ8 235 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 NDUFAF6Q330K2 333 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 TRMT10CQ7L0Y3 403 aaKnown RBP17.16■□□□□ 0.34
CLN3-262ENST00000637699 HTRA1Q92743 480 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 ADAD1Q96M93 576 aaKnown RBP17.16■□□□□ 0.34
CLN3-262ENST00000637699 KCNK17Q96T54 332 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 CCT7Q99832 543 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 PSD2Q9BQI7 771 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 CACNG6Q9BXT2 260 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 L2HGDHQ9H9P8 463 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 BCO1Q9HAY6 547 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 ZCCHC3Q9NUD5 404 aaKnown RBP17.16■□□□□ 0.34
CLN3-262ENST00000637699 NPAP1Q9NZP6 1156 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 TBK1Q9UHD2 729 aa17.16■□□□□ 0.34
CLN3-262ENST00000637699 ING1Q9UK53 422 aaPredicted RBP17.16■□□□□ 0.34
CLN3-262ENST00000637699 CDC42EP3Q9UKI2 254 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms