RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 EIPR1Q53HC9 387 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 PRSS58Q8IYP2 241 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 SIRT6Q8N6T7 355 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 ZNF321PQ8N8H1 164 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 OR4C3Q8NH37 302 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 FANK1Q8TC84 345 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 RELTQ969Z4 430 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 SECISBP2Q96T21 854 aaKnown RBP9.82□□□□□ -0.84
CUX1-221ENST00000622516 MROQ9BYG7 248 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 TBC1D17Q9HA65 648 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 PRTFDC1Q9NRG1 225 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 TXNL4BQ9NX01 149 aaKnown RBP9.82□□□□□ -0.84
CUX1-221ENST00000622516 NDUFB11Q9NX14 153 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 ZNF229Q9UJW7 825 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 LINC00854A0A1B0GVQ3 168 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 HTR3EA5X5Y0 456 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 UNC119BA6NIH7 251 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 DVL2O14641 736 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 MTRF1O75570 445 aaKnown RBP9.82□□□□□ -0.84
CUX1-221ENST00000622516 REM1O75628 298 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 NGFRP08138 427 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 MRPL3P09001 348 aaKnown RBP9.82□□□□□ -0.84
CUX1-221ENST00000622516 NME1P15531 152 aaKnown RBP9.82□□□□□ -0.84
CUX1-221ENST00000622516 RPS4Y1P22090 263 aaKnown RBP9.82□□□□□ -0.84
CUX1-221ENST00000622516 AZGP1P25311 298 aaKnown RBP9.82□□□□□ -0.84
CUX1-221ENST00000622516 MAP3K8P41279 467 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 MLLT3P42568 568 aaPredicted RBP9.82□□□□□ -0.84
CUX1-221ENST00000622516 SLC9A3P48764 834 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 WNT4P56705 351 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 BNC1Q01954 994 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 RAB40BQ12829 278 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 MLLT11Q13015 90 aaPredicted RBP9.82□□□□□ -0.84
CUX1-221ENST00000622516 PRTGQ2VWP7 1150 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 GXYLT1Q4G148 440 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 CRTC2Q53ET0 693 aaPredicted RBP9.82□□□□□ -0.84
CUX1-221ENST00000622516 ZMAT1Q5H9K5 638 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 MANEAQ5SRI9 462 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 AADACL4Q5VUY2 407 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 DESI1Q6ICB0 168 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 NPSR1Q6W5P4 371 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 LAPTM4BQ86VI4 370 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 BPIFA2Q96DR5 249 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 DNAJA3Q96EY1 480 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 CD180Q99467 661 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 STACQ99469 402 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 TMED9Q9BVK6 235 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 IFT27Q9BW83 186 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 HDHD5Q9BXW7 423 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 TTTY10Q9BZA0 68 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 OR51V1Q9H2C8 321 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 ISG20L2Q9H9L3 353 aaKnown RBP9.82□□□□□ -0.84
CUX1-221ENST00000622516 CBLCQ9ULV8 474 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 STUB1Q9UNE7 303 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 CDH10Q9Y6N8 788 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 SLC35F4A4IF30 521 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 METTL12A8MUP2 240 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 RNH1P13489 461 aaKnown RBP9.81□□□□□ -0.84
CUX1-221ENST00000622516 TGM1P22735 817 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 CD27P26842 260 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 RELAQ04206 551 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 MINDY4Q4G0A6 757 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.81□□□□□ -0.84
CUX1-221ENST00000622516 TTLL10Q6ZVT0 673 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 LYSMD2Q8IV50 215 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 Q8N9G6 341 aaPredicted RBP9.81□□□□□ -0.84
CUX1-221ENST00000622516 POC5Q8NA72 575 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 OR51Q1Q8NH59 317 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 C16orf52Q8NHV5 167 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 EFHD2Q96C19 240 aaPredicted RBP9.81□□□□□ -0.84
CUX1-221ENST00000622516 H2AFY2Q9P0M6 372 aaPredicted RBP9.81□□□□□ -0.84
CUX1-221ENST00000622516 DHCR7Q9UBM7 475 aaKnown RBP9.81□□□□□ -0.84
CUX1-221ENST00000622516 ZNF223Q9UK11 482 aaPredicted RBP9.81□□□□□ -0.84
CUX1-221ENST00000622516 SSR3Q9UNL2 185 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 SATB2Q9UPW6 733 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 CFL2Q9Y281 166 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 OR10H1Q9Y4A9 318 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 CLDN16Q9Y5I7 305 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 A0A1B0GWA3 101 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 A0A1W2PR77 199 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 KDM4EB2RXH2 506 aaPredicted RBP9.81□□□□□ -0.84
CUX1-221ENST00000622516 HRO43593 1189 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 ZNF217O75362 1048 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 NKX2-2O95096 273 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 LYPD3O95274 346 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 BMP7P18075 431 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 CELP19835 753 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 ENDOUP21128 410 aaKnown RBP9.81□□□□□ -0.84
CUX1-221ENST00000622516 NOS3P29474 1203 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 SDC2P34741 201 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 SLC1A3P43003 542 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 OR1D5P58170 312 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 RPS7P62081 194 aaKnown RBP9.81□□□□□ -0.84
CUX1-221ENST00000622516 SMAD4Q13485 552 aaKnown RBP9.81□□□□□ -0.84
CUX1-221ENST00000622516 EXOSC6Q5RKV6 272 aaKnown RBP9.81□□□□□ -0.84
CUX1-221ENST00000622516 SLC25A30Q5SVS4 291 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 PLEKHG7Q6ZR37 379 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 CXXC5Q7LFL8 322 aaKnown RBP9.81□□□□□ -0.84
CUX1-221ENST00000622516 LAX1Q8IWV1 398 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 ZNF687Q8N1G0 1237 aa9.81□□□□□ -0.84
CUX1-221ENST00000622516 LRRC17Q8N6Y2 441 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 987.5 ms