RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 HIDE1A8MVS5 230 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 ACOT7O00154 380 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 TMEM225BP0DP42 221 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 ARRB2P32121 409 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 SFTPDP35247 375 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 CAPZA1P52907 286 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 HTRA3P83110 453 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 HYAL4Q2M3T9 481 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 XKR7Q5GH72 579 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 IL20RBQ6UXL0 311 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 KIF18BQ86Y91 864 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 LRRC56Q8IYG6 542 aaPredicted RBP13.13□□□□□ -0.31
CPSF1-212ENST00000616140 ENTHD1Q8IYW4 607 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 DNAJC5GQ8N7S2 189 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 OR5K2Q8NHB8 316 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 KLK4Q9Y5K2 254 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 AP1G1O43747 822 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 OR2T1O43869 369 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 MPIG6BO95866 241 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 SYPP08247 313 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 ZNF616Q08AN1 781 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 MFSD13AQ14CX5 517 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 OR1Q1Q15612 314 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 KCNJ8Q15842 424 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 AWAT2Q6E213 333 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 DLEU7Q6UYE1 221 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 TMEM184AQ6ZMB5 413 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 MEPCEQ7L2J0 689 aaKnown RBP13.12□□□□□ -0.31
CPSF1-212ENST00000616140 SNAPC3Q92966 411 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 UHRF1Q96T88 793 aaPredicted RBP13.12□□□□□ -0.31
CPSF1-212ENST00000616140 TMEM121BQ9BXQ6 578 aaPredicted RBP13.12□□□□□ -0.31
CPSF1-212ENST00000616140 SLC35A3Q9Y2D2 325 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 MEIS3P1A6NDR6 274 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 EGFP01133 1207 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 SMIM18P0DKX4 95 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 CPMP14384 443 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 SNU13P55769 128 aaKnown RBP13.12□□□□□ -0.31
CPSF1-212ENST00000616140 GLO1Q04760 184 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 MRPL2Q5T653 305 aaKnown RBP13.12□□□□□ -0.31
CPSF1-212ENST00000616140 KIAA1211LQ6NV74 962 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 GSG1LQ6UXU4 331 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 SHISA6Q6ZSJ9 500 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 LAX1Q8IWV1 398 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 FAM71F1Q96KD3 344 aaPredicted RBP13.12□□□□□ -0.31
CPSF1-212ENST00000616140 ZNF226Q9NYT6 803 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 NDUFAF4Q9P032 175 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 DNMT3BQ9UBC3 853 aaKnown RBP13.12□□□□□ -0.31
CPSF1-212ENST00000616140 A8MVJ9 347 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 ZNF195O14628 629 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 GABARAPO95166 117 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 HOXD12P35452 270 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 STEAP3Q658P3 488 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 SH2D5Q6ZV89 423 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 SLC46A3Q7Z3Q1 461 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 LRRC28Q86X40 367 aaPredicted RBP13.12□□□□□ -0.31
CPSF1-212ENST00000616140 MCATQ8IVS2 390 aaKnown RBP13.12□□□□□ -0.31
CPSF1-212ENST00000616140 ZSCAN4Q8NAM6 433 aaPredicted RBP13.12□□□□□ -0.31
CPSF1-212ENST00000616140 NPRL2Q8WTW4 380 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 TIMM29Q9BSF4 260 aa13.12□□□□□ -0.31
CPSF1-212ENST00000616140 GFRA2O00451 464 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 SPDEFO95238 335 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 MMP2P08253 660 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 AQP2P41181 271 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 SLC26A5P58743 744 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 TBC1D25Q3MII6 688 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 CHRDL2Q6WN34 429 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 TMEFF1Q8IYR6 380 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 OR9A4Q8NGU2 314 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 NUBP2Q9Y5Y2 271 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 V9GY05 133 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 A0A1B0GTW7 788 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 GABRPO00591 440 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 UBL4AP11441 157 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 F3P13726 295 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 SLC2A5P22732 501 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 VEGFBP49765 207 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 ADARB1P78563 741 aaKnown RBP13.11□□□□□ -0.31
CPSF1-212ENST00000616140 CCINQ13939 588 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 GALNT6Q8NCL4 622 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 OR13C2Q8NGS9 318 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 NECTIN4Q96NY8 510 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 INTS14Q96SY0 518 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 C8orf33Q9H7E9 229 aaPredicted RBP13.11□□□□□ -0.31
CPSF1-212ENST00000616140 CPNE7Q9UBL6 633 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 CA14Q9ULX7 337 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 ZNF443Q9Y2A4 671 aaPredicted RBP13.11□□□□□ -0.31
CPSF1-212ENST00000616140 CA5BQ9Y2D0 317 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 NWD2Q9ULI1 1742 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 PRSS38A1L453 326 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 MAN2B1O00754 1011 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 SEC14L2O76054 403 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 ALDOBP05062 364 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 ADH6P28332 368 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 CRABP1P29762 137 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 FIP1L1Q6UN15 594 aaKnown RBP13.11□□□□□ -0.31
CPSF1-212ENST00000616140 TMEM150AQ86TG1 271 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 MAFIPQ8WZ33 124 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 NINJ1Q92982 152 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 MED20Q9H944 212 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 RLIMQ9NVW2 624 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms