RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 CLCF1Q9UBD9 225 aa14.6□□□□□ -0.07
LSM4-206ENST00000600289 DCTN4Q9UJW0 460 aa14.6□□□□□ -0.07
LSM4-206ENST00000600289 MKLN1Q9UL63 735 aa14.6□□□□□ -0.07
LSM4-206ENST00000600289 VDAC3Q9Y277 283 aa14.6□□□□□ -0.07
LSM4-206ENST00000600289 ZNF337Q9Y3M9 751 aa14.6□□□□□ -0.07
LSM4-206ENST00000600289 L3MBTL1Q9Y468 752 aa14.6□□□□□ -0.07
LSM4-206ENST00000600289 A0A0G2JND7 137 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 A0A1W2PP18 115 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 CLCA1A8K7I4 914 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 KDM4EB2RXH2 506 aaPredicted RBP14.59□□□□□ -0.07
LSM4-206ENST00000600289 OIP5O43482 229 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 H6PDO95479 791 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 IL2RAP01589 272 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 TROVE2P10155 538 aaKnown RBP eCLIP14.59□□□□□ -0.07
LSM4-206ENST00000600289 BMP2P12643 396 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 CAPN3P20807 821 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 RPS4Y1P22090 263 aaKnown RBP14.59□□□□□ -0.07
LSM4-206ENST00000600289 ELK4P28324 431 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 ADH6P28332 368 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 FADDQ13158 208 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 SKP2Q13309 424 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 SLC25A35Q3KQZ1 300 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 SLC25A53Q5H9E4 307 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 C6orf10Q5SRN2 563 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 GGNQ86UU5 652 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 NAXEQ8NCW5 288 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 TNIP2Q8NFZ5 429 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 OR10Q1Q8NGQ4 319 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 TSPEARQ8WU66 669 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 WNT2BQ93097 391 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 TM9SF2Q99805 663 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 TREX2Q9BQ50 279 aaPredicted RBP14.59□□□□□ -0.07
LSM4-206ENST00000600289 LAT2Q9GZY6 243 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 SLC38A1Q9H2H9 487 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 RAD21L1Q9H4I0 556 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 STOML1Q9UBI4 398 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 P2RX2Q9UBL9 471 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 ZNF629Q9UEG4 869 aaPredicted RBP14.59□□□□□ -0.07
LSM4-206ENST00000600289 SLC35A3Q9Y2D2 325 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 CARD8Q9Y2G2 431 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 PCDHB14Q9Y5E9 798 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 DSPPQ9NZW4 1301 aa14.59□□□□□ -0.07
LSM4-206ENST00000600289 TRBV5-3A0A0A0MS03 114 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 CENPVL1A0A0U1RR11 272 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 GTPBP1O00178 669 aaKnown RBP14.58□□□□□ -0.08
LSM4-206ENST00000600289 NR5A2O00482 541 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 NTN1O95631 604 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 IL18BPO95998 194 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 CHRM4P08173 479 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 TCEA1P23193 301 aaKnown RBP14.58□□□□□ -0.08
LSM4-206ENST00000600289 PGM1P36871 562 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 DLX5P56178 289 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 CLDN15P56746 228 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 GUCY1A3Q02108 690 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 CHRNEQ04844 493 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 MAPK11Q15759 364 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 MAPK14Q16539 360 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 SYPL1Q16563 259 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 GTDC1Q4AE62 458 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 GPAT3Q53EU6 434 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 AGKQ53H12 422 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 CGB2Q6NT52 195 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 POMZP3Q6PJE2 187 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 EIF3MQ7L2H7 374 aaKnown RBP14.58□□□□□ -0.08
LSM4-206ENST00000600289 CMIPQ8IY22 773 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 METTL25Q8N6Q8 603 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 ZNF614Q8N883 585 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 ANKFN1Q8N957 763 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 OR5W2Q8NH69 310 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 POC1BQ8TC44 478 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 PNPT1Q8TCS8 783 aaKnown RBP14.58□□□□□ -0.08
LSM4-206ENST00000600289 GPR119Q8TDV5 335 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 THOC1Q96FV9 657 aaKnown RBP14.58□□□□□ -0.08
LSM4-206ENST00000600289 KLHDC3Q9BQ90 382 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 TMEM120AQ9BXJ8 343 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 ENKD1Q9H0I2 346 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 KCNJ16Q9NPI9 418 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 EXOSC3Q9NQT5 275 aaKnown RBP14.58□□□□□ -0.08
LSM4-206ENST00000600289 FGFR1OP2Q9NVK5 253 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 CALML5Q9NZT1 146 aa14.58□□□□□ -0.08
LSM4-206ENST00000600289 GPC6Q9Y625 555 aaPredicted RBP14.58□□□□□ -0.08
LSM4-206ENST00000600289 INTS1Q8N201 2190 aaKnown RBP14.58□□□□□ -0.08
LSM4-206ENST00000600289 AGAP5A6NIR3 686 aa14.57□□□□□ -0.08
LSM4-206ENST00000600289 H3BML4 177 aa14.57□□□□□ -0.08
LSM4-206ENST00000600289 C19orf84I3L1E1 186 aa14.57□□□□□ -0.08
LSM4-206ENST00000600289 GMFGO60234 142 aa14.57□□□□□ -0.08
LSM4-206ENST00000600289 RCBTB2O95199 551 aa14.57□□□□□ -0.08
LSM4-206ENST00000600289 IGFBP2P18065 325 aa14.57□□□□□ -0.08
LSM4-206ENST00000600289 NCF2P19878 526 aaPredicted RBP14.57□□□□□ -0.08
LSM4-206ENST00000600289 PPIBP23284 216 aaKnown RBP14.57□□□□□ -0.08
LSM4-206ENST00000600289 MDH1P40925 334 aaKnown RBP14.57□□□□□ -0.08
LSM4-206ENST00000600289 ZNF136P52737 540 aa14.57□□□□□ -0.08
LSM4-206ENST00000600289 DSTNP60981 165 aa14.57□□□□□ -0.08
LSM4-206ENST00000600289 RAC1P63000 192 aa14.57□□□□□ -0.08
LSM4-206ENST00000600289 EEF1A1P68104 462 aaKnown RBP14.57□□□□□ -0.08
LSM4-206ENST00000600289 SRYQ05066 204 aa14.57□□□□□ -0.08
LSM4-206ENST00000600289 CBFBQ13951 182 aa14.57□□□□□ -0.08
LSM4-206ENST00000600289 EEF1A1P5Q5VTE0 462 aa14.57□□□□□ -0.08
LSM4-206ENST00000600289 OLIG3Q7RTU3 272 aa14.57□□□□□ -0.08
LSM4-206ENST00000600289 LIX1LQ8IVB5 337 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms