RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 OR5M1Q8NGP8 315 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 RFWD2Q8NHY2 731 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 MARVELD3Q96A59 401 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 ZNF524Q96C55 264 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 SPDL1Q96EA4 605 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 RNF145Q96MT1 663 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 TM9SF2Q99805 663 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 TRIM8Q9BZR9 551 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 RUBCNLQ9H714 662 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 TPT1P8Q9HAU6 139 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 NPHS2Q9NP85 383 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 KCNJ16Q9NPI9 418 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 CARD8Q9Y2G2 431 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 MPDZO75970 2070 aa14.54□□□□□ -0.08
TRIM28-213ENST00000598355 TEX15Q9BXT5 2789 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 A0A096LPI6 279 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 H0YC42 278 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 H3BML4 177 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 ATP8B1O43520 1251 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 GMFGO60234 142 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 RCBTB2O95199 551 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 NID1P14543 1247 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 PGM1P36871 562 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 EIF1P41567 113 aaKnown RBP14.53□□□□□ -0.08
TRIM28-213ENST00000598355 TPD52P55327 224 aaPredicted RBP14.53□□□□□ -0.08
TRIM28-213ENST00000598355 FOXF1Q12946 379 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 SYPL1Q16563 259 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 SLC2A7Q6PXP3 512 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 MSRB3Q8IXL7 192 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 MEIOBQ8N635 442 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 ANKFN1Q8N957 763 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 OR5W2Q8NH69 310 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 PNPT1Q8TCS8 783 aaKnown RBP14.53□□□□□ -0.08
TRIM28-213ENST00000598355 GPR119Q8TDV5 335 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 PMM1Q92871 262 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 AURKBQ96GD4 344 aaPredicted RBP14.53□□□□□ -0.08
TRIM28-213ENST00000598355 LAT2Q9GZY6 243 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 SLC25A37Q9NYZ2 338 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 JKAMPQ9P055 326 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 CCDC167Q9P0B6 97 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 SLC35A3Q9Y2D2 325 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 ZNF175Q9Y473 711 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 PCDHB14Q9Y5E9 798 aa14.53□□□□□ -0.08
TRIM28-213ENST00000598355 GPC6Q9Y625 555 aaPredicted RBP14.53□□□□□ -0.08
TRIM28-213ENST00000598355 AGAP5A6NIR3 686 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 DVL2O14641 736 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 ADAMDEC1O15204 470 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 TGM6O95932 706 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 CSTAP01040 98 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 CD1EP15812 388 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 PRKCAP17252 672 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 CTSSP25774 331 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 RNF144AP50876 292 aaPredicted RBP14.52□□□□□ -0.09
TRIM28-213ENST00000598355 EEFSECP57772 596 aaKnown RBP14.52□□□□□ -0.09
TRIM28-213ENST00000598355 RAC1P63000 192 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 CHRNEQ04844 493 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 FADDQ13158 208 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 GUSBP1Q15486 140 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 TOMM34Q15785 309 aaPredicted RBP14.52□□□□□ -0.09
TRIM28-213ENST00000598355 C6orf10Q5SRN2 563 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 CGB2Q6NT52 195 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 PLXDC2Q6UX71 529 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 UBQLNLQ8IYU4 475 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 ZNF614Q8N883 585 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 ZG16BQ96DA0 208 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 SFXN3Q9BWM7 321 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 EXOSC3Q9NQT5 275 aaKnown RBP14.52□□□□□ -0.09
TRIM28-213ENST00000598355 DCTN4Q9UJW0 460 aa14.52□□□□□ -0.09
TRIM28-213ENST00000598355 LRBAP50851 2863 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 NR5A2O00482 541 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 EFNA2O43921 213 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 BCAS1O75363 584 aaPredicted RBP14.51□□□□□ -0.09
TRIM28-213ENST00000598355 ANP32DO95626 131 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 CRHP06850 196 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 TMIGD3P0DMS9 266 aaPredicted RBP14.51□□□□□ -0.09
TRIM28-213ENST00000598355 ETFAP13804 333 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 PRF1P14222 555 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 COX6B1P14854 86 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 ASCL1P50553 236 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 HPCAP84074 193 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 FOXF2Q12947 444 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 CBFBQ13951 182 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 GPAT3Q53EU6 434 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 PAGE3Q5JUK9 113 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 METTL21CQ5VZV1 264 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 EIF3MQ7L2H7 374 aaKnown RBP14.51□□□□□ -0.09
TRIM28-213ENST00000598355 GRAMD2AQ8IUY3 354 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 DMRTC2Q8IXT2 367 aaPredicted RBP14.51□□□□□ -0.09
TRIM28-213ENST00000598355 CMIPQ8IY22 773 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 ZNF295-AS1Q8N0V1 137 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 THOC1Q96FV9 657 aaKnown RBP14.51□□□□□ -0.09
TRIM28-213ENST00000598355 MRGPRX4Q96LA9 322 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 QRSL1Q9H0R6 528 aaKnown RBP14.51□□□□□ -0.09
TRIM28-213ENST00000598355 RABEP2Q9H5N1 569 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 RNF122Q9H9V4 155 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 FGFR1OP2Q9NVK5 253 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 THUMPD1Q9NXG2 353 aaKnown RBP14.51□□□□□ -0.09
TRIM28-213ENST00000598355 STOML1Q9UBI4 398 aa14.51□□□□□ -0.09
TRIM28-213ENST00000598355 P2RX2Q9UBL9 471 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms