RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 BEST3Q8N1M1 668 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 OR52J3Q8NH60 311 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 OR5W2Q8NH69 310 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 ZNF563Q8TA94 476 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 ADAMTS16Q8TE57 1224 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 PAQR8Q8TEZ7 354 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 GIPC3Q8TF64 312 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 RNF138Q8WVD3 245 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 SLC41A3Q96GZ6 507 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 DHRS1Q96LJ7 313 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 HS6ST2Q96MM7 605 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 RBM4BQ9BQ04 359 aaKnown RBP13.95□□□□□ -0.18
TRIM28-209ENST00000597423 RBM4Q9BWF3 364 aaKnown RBP13.95□□□□□ -0.18
TRIM28-209ENST00000597423 COQ10BQ9H8M1 238 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 ZNF556Q9HAH1 456 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 KRCC1Q9NPI7 259 aaPredicted RBP13.95□□□□□ -0.18
TRIM28-209ENST00000597423 PDP1Q9P0J1 537 aaPredicted RBP13.95□□□□□ -0.18
TRIM28-209ENST00000597423 PPP4R1LQ9P1A2 415 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 LYVE1Q9Y5Y7 322 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 SPEGQ15772 3267 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 A6NL46 340 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 FFAR1O14842 300 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 EFSO43281 561 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 TLX3O43711 291 aaPredicted RBP13.94□□□□□ -0.18
TRIM28-209ENST00000597423 MAN1A2O60476 641 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 RASAL1O95294 804 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 NUDT14O95848 222 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 ANXA8P13928 327 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 RYKP34925 604 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 HSPA13P48723 471 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 RNF144AP50876 292 aaPredicted RBP13.94□□□□□ -0.18
TRIM28-209ENST00000597423 CCR4P51679 360 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 HOXC5Q00444 222 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 MICAQ29983 383 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 DEFB109BQ30KR1 87 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 FGD3Q5JSP0 725 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 OTUD3Q5T2D3 398 aaPredicted RBP13.94□□□□□ -0.18
TRIM28-209ENST00000597423 SWT1Q5T5J6 900 aaKnown RBP13.94□□□□□ -0.18
TRIM28-209ENST00000597423 ATP1A1-AS1Q5TC04 95 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 DESI1Q6ICB0 168 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 APLFQ8IW19 511 aaPredicted RBP13.94□□□□□ -0.18
TRIM28-209ENST00000597423 CADM2Q8N3J6 435 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 CBR4Q8N4T8 237 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 RNF217Q8TC41 542 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 NRG4Q8WWG1 115 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 TMEM234Q8WY98 164 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 MPP4Q96JB8 637 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 WFDC6Q9BQY6 131 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 OSBPL11Q9BXB4 747 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 ANGPTL4Q9BY76 406 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 PTGES2Q9H7Z7 377 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 SACM1LQ9NTJ5 587 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 GPR83Q9NYM4 423 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 RHCGQ9UBD6 479 aa13.94□□□□□ -0.18
TRIM28-209ENST00000597423 CHCHD2Q9Y6H1 151 aaPredicted RBP13.94□□□□□ -0.18
TRIM28-209ENST00000597423 IGLV3-32A0A0A0MS00 114 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 ARRDC5A6NEK1 342 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 TPST2O60704 377 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 HPRP00739 348 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 PNMTP11086 282 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 GP1BBP13224 206 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 PRG2P13727 222 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 HTR3AP46098 478 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 IDH2P48735 452 aaKnown RBP13.93□□□□□ -0.18
TRIM28-209ENST00000597423 ALDH3A2P51648 485 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 CCL11P51671 97 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 SRSF6Q13247 344 aaKnown RBP13.93□□□□□ -0.18
TRIM28-209ENST00000597423 DAG1Q14118 895 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 EXOC3L2Q2M3D2 409 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 GDF7Q7Z4P5 450 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 RNF113BQ8IZP6 322 aaKnown RBP13.93□□□□□ -0.18
TRIM28-209ENST00000597423 GALNT4Q8N4A0 578 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 ATG16L2Q8NAA4 619 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 OR4C15Q8NGM1 316 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 MAGEE2Q8TD90 523 aaPredicted RBP13.93□□□□□ -0.18
TRIM28-209ENST00000597423 ARSGQ96EG1 525 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 SH3YL1Q96HL8 342 aaPredicted RBP13.93□□□□□ -0.18
TRIM28-209ENST00000597423 PRR14Q9BWN1 585 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 SH2D2AQ9NP31 389 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 LRFN1Q9P244 771 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 KIF17Q9P2E2 1029 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 ICAM5Q9UMF0 924 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 PCDHGB6Q9Y5F9 930 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 WIF1Q9Y5W5 379 aa13.93□□□□□ -0.18
TRIM28-209ENST00000597423 A0A1B0GWA3 101 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 HTR3EA5X5Y0 456 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 ANKUB1A6NFN9 424 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 PDLIM1O00151 329 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 BCAS1O75363 584 aaPredicted RBP13.92□□□□□ -0.18
TRIM28-209ENST00000597423 CDH2P19022 906 aaPredicted RBP13.92□□□□□ -0.18
TRIM28-209ENST00000597423 WT1P19544 449 aaPredicted RBP13.92□□□□□ -0.18
TRIM28-209ENST00000597423 CD96P40200 585 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 EIF2S3P41091 472 aaKnown RBP13.92□□□□□ -0.18
TRIM28-209ENST00000597423 SLC1A3P43003 542 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 MASP1P48740 699 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 IST1P53990 364 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 RAD23AP54725 363 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 GAS1P54826 345 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 UCNP55089 124 aa13.92□□□□□ -0.18
TRIM28-209ENST00000597423 ZNF117Q03924 483 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms