RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 TP53I3Q53FA7 332 aa14.21□□□□□ -0.13
UPF1-204ENST00000596842 LINC00471Q8N535 108 aa14.21□□□□□ -0.13
UPF1-204ENST00000596842 C17orf47Q8NEP4 570 aa14.21□□□□□ -0.13
UPF1-204ENST00000596842 HERVK_113Q902F9 699 aa14.21□□□□□ -0.13
UPF1-204ENST00000596842 DIO2Q92813 273 aa14.21□□□□□ -0.13
UPF1-204ENST00000596842 DNAJA3Q96EY1 480 aa14.21□□□□□ -0.13
UPF1-204ENST00000596842 ABHD1Q96SE0 405 aa14.21□□□□□ -0.13
UPF1-204ENST00000596842 ORAI3Q9BRQ5 295 aa14.21□□□□□ -0.13
UPF1-204ENST00000596842 BABAM2Q9NXR7 383 aa14.21□□□□□ -0.13
UPF1-204ENST00000596842 TP53BP1Q12888 1972 aaPredicted RBP14.21□□□□□ -0.13
UPF1-204ENST00000596842 SLC9B1P1A6NJY1 282 aa14.21□□□□□ -0.14
UPF1-204ENST00000596842 LDB3O75112 727 aa14.21□□□□□ -0.14
UPF1-204ENST00000596842 TEAD1P28347 426 aa14.21□□□□□ -0.14
UPF1-204ENST00000596842 SNRPNP63162 240 aaKnown RBP14.21□□□□□ -0.14
UPF1-204ENST00000596842 C21orf62-AS1Q17RA5 79 aa14.21□□□□□ -0.14
UPF1-204ENST00000596842 AADACL4Q5VUY2 407 aa14.21□□□□□ -0.14
UPF1-204ENST00000596842 ABHD17CQ6PCB6 329 aa14.21□□□□□ -0.14
UPF1-204ENST00000596842 FBXW5Q969U6 566 aa14.21□□□□□ -0.14
UPF1-204ENST00000596842 CD180Q99467 661 aa14.21□□□□□ -0.14
UPF1-204ENST00000596842 FBXO34Q9NWN3 711 aa14.21□□□□□ -0.14
UPF1-204ENST00000596842 KLHL21Q9UJP4 597 aa14.21□□□□□ -0.14
UPF1-204ENST00000596842 ABHD14A-ACY1A0A1B0GW23 586 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 C1QTNF3-AMACRE9PGA6 284 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 RD3LP0DJH9 198 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 FGF9P31371 208 aaPredicted RBP14.2□□□□□ -0.14
UPF1-204ENST00000596842 SEC13P55735 322 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 ZNF620Q6ZNG0 422 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 HDDC3Q8N4P3 179 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 OR7G2Q8NG99 324 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 PCBD2Q9H0N5 130 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 SYNPO2LQ9H987 977 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 TRIM36Q9NQ86 728 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 NFKBIL1Q9UBC1 381 aaPredicted RBP14.2□□□□□ -0.14
UPF1-204ENST00000596842 AK6Q9Y3D8 172 aaKnown RBP14.2□□□□□ -0.14
UPF1-204ENST00000596842 TEX13CA0A0J9YWL9 993 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 PEX12O00623 359 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 CISD3P0C7P0 127 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 CXCL3P19876 107 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 BICRALQ6AI39 1079 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 SERGEFQ9UGK8 458 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 CDH10Q9Y6N8 788 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 KDM4EB2RXH2 506 aaPredicted RBP14.2□□□□□ -0.14
UPF1-204ENST00000596842 CASC3O15234 703 aaKnown RBP14.2□□□□□ -0.14
UPF1-204ENST00000596842 DNAJB6O75190 326 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 THY1P04216 161 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 PITPNBP48739 271 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 GXYLT1Q4G148 440 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 KCTD20Q7Z5Y7 419 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 PLCZ1Q86YW0 608 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 TCTE3Q8IZS6 198 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 VWCEQ96DN2 955 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 ZMYND19Q96E35 227 aaPredicted RBP14.2□□□□□ -0.14
UPF1-204ENST00000596842 MED18Q9BUE0 208 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 CERS4Q9HA82 394 aa14.2□□□□□ -0.14
UPF1-204ENST00000596842 PAK6Q9NQU5 681 aaPredicted RBP14.2□□□□□ -0.14
UPF1-204ENST00000596842 APOBEC3BQ9UH17 382 aaKnown RBP14.2□□□□□ -0.14
UPF1-204ENST00000596842 MDC1Q14676 2089 aaKnown RBP14.2□□□□□ -0.14
UPF1-204ENST00000596842 KCNJ13O60928 360 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 CLEC3AO75596 197 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 ZIC2O95409 532 aaPredicted RBP14.19□□□□□ -0.14
UPF1-204ENST00000596842 S100A9P06702 114 aaKnown RBP14.19□□□□□ -0.14
UPF1-204ENST00000596842 TFPIP10646 304 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 STOMP27105 288 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 VSX2P58304 361 aaPredicted RBP14.19□□□□□ -0.14
UPF1-204ENST00000596842 TRMT12Q53H54 448 aaKnown RBP14.19□□□□□ -0.14
UPF1-204ENST00000596842 EOGTQ5NDL2 527 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 SFXN4Q6P4A7 337 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 FAM181AQ8N9Y4 354 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 OR4D9Q8NGE8 314 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 ZNF559Q9BR84 538 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 CACNG6Q9BXT2 260 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 RBCK1Q9BYM8 510 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 SLC6A17Q9H1V8 727 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 DIABLOQ9NR28 239 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 CPNE7Q9UBL6 633 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 PLCL2Q9UPR0 1127 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 INSL6Q9Y581 213 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 CACNG2Q9Y698 323 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 FAM171A2A8MVW0 826 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 PPP1R3DO95685 299 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 ZNF888P0CJ79 500 aaPredicted RBP14.19□□□□□ -0.14
UPF1-204ENST00000596842 NT5EP21589 574 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 CFL1P23528 166 aaKnown RBP14.19□□□□□ -0.14
UPF1-204ENST00000596842 HTR1FP30939 366 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 MAGEB1P43366 347 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 DGCR2P98153 550 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 SGCGQ13326 291 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 PIAS4Q8N2W9 510 aaPredicted RBP14.19□□□□□ -0.14
UPF1-204ENST00000596842 OR14C36Q8NHC7 312 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 DNAJA4Q8WW22 397 aaPredicted RBP14.19□□□□□ -0.14
UPF1-204ENST00000596842 FAM83CQ9BQN1 747 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 MARVELD1Q9BSK0 173 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 NDC1Q9BTX1 674 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 SEC16AO15027 2179 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 SLC43A1O75387 559 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 HMGN1P05114 100 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 NNATQ16517 81 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 LAMTOR1Q6IAA8 161 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 VITQ6UXI7 678 aa14.19□□□□□ -0.14
UPF1-204ENST00000596842 THSD4Q6ZMP0 1018 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms