RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 VRK2Q86Y07 508 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 MMP21Q8N119 569 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 ZNF676Q8N7Q3 588 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 STON2Q8WXE9 905 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 GAL3ST1Q99999 423 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 DUSP22Q9NRW4 184 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 KLF13Q9Y2Y9 288 aaPredicted RBP9.14□□□□□ -0.95
LIG3-216ENST00000593099 YARS2Q9Y2Z4 477 aaKnown RBP9.14□□□□□ -0.95
LIG3-216ENST00000593099 PMF1-BGLAPU3KQ54 211 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 SLC30A4O14863 429 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 CTXN1P60606 82 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 TRMT12Q53H54 448 aaKnown RBP9.14□□□□□ -0.95
LIG3-216ENST00000593099 MRPL2Q5T653 305 aaKnown RBP9.14□□□□□ -0.95
LIG3-216ENST00000593099 CGB2Q6NT52 195 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 ARHGAP11AQ6P4F7 1023 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 SLC16A11Q8NCK7 471 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 C19orf18Q8NEA5 215 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 GATAD2BQ8WXI9 593 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 SLC7A6OSQ96CW6 309 aaPredicted RBP9.14□□□□□ -0.95
LIG3-216ENST00000593099 FAM122AQ96E09 287 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 OR2A5Q96R48 311 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 STACQ99469 402 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 C6orf62Q9GZU0 229 aaPredicted RBP9.14□□□□□ -0.95
LIG3-216ENST00000593099 SLC7A7Q9UM01 511 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 ING4Q9UNL4 249 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 SOCS2O14508 198 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 PNPP00491 289 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 ADAP00813 363 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 MSX1P28360 303 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 IDUAP35475 653 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 UNQ6126/PRO20091Q6UXV3 157 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 PRSS42Q7Z5A4 293 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 SLC22A16Q86VW1 577 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 GRAMD2AQ8IUY3 354 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 SLC22A18ASQ8N1D0 253 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 KLHL36Q8N4N3 616 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 TMEM239Q8WW34 195 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 RDH12Q96NR8 316 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 ZNF300Q96RE9 604 aaPredicted RBP9.14□□□□□ -0.95
LIG3-216ENST00000593099 CTSFQ9UBX1 484 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 PPT2Q9UMR5 302 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 CACNA1EQ15878 2313 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 LOC100130705A0A1B0GUX0 176 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 TTLL8A6PVC2 850 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 NDUFB2O95178 105 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 EML2O95834 649 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 RPS2P15880 293 aaKnown RBP9.14□□□□□ -0.95
LIG3-216ENST00000593099 STAT5AP42229 794 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 PPICP45877 212 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 AQP4P55087 323 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 PRAMEF17Q5VTA0 474 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 SPAG16Q8N0X2 631 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 ZNF433Q8N7K0 673 aaPredicted RBP9.14□□□□□ -0.95
LIG3-216ENST00000593099 BBS1Q8NFJ9 593 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 SLC38A5Q8WUX1 472 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 FBXL20Q96IG2 436 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 PRRC1Q96M27 445 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 DSN1Q9H410 356 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 NDUFAF4Q9P032 175 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 TESQ9UGI8 421 aaKnown RBP9.14□□□□□ -0.95
LIG3-216ENST00000593099 POU2F3Q9UKI9 436 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 PCDHGA10Q9Y5H3 936 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 GVINP1Q7Z2Y8 2422 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 KCNE1BA0A087WTH5 132 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 SBK3P0C264 359 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 FUT1P19526 365 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 RPL5P46777 297 aaKnown RBP9.13□□□□□ -0.95
LIG3-216ENST00000593099 PRPS1P60891 318 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 PPP1CAP62136 330 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 VLDLRP98155 873 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 GAS6Q14393 721 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 OR7A5Q15622 319 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 CSRP2Q16527 193 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 MEDAGQ5VYS4 303 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 SH2D5Q6ZV89 423 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 GID4Q8IVV7 300 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 OR6N2Q8NGY6 317 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 CXorf21Q9HAI6 301 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 PLAC1Q9HBJ0 212 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 DCAF13Q9NV06 445 aaKnown RBP9.13□□□□□ -0.95
LIG3-216ENST00000593099 RALGAPA2Q2PPJ7 1873 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 I3L521 148 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 EIF1AYO14602 144 aaKnown RBP9.13□□□□□ -0.95
LIG3-216ENST00000593099 ETHE1O95571 254 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 SOD1P00441 154 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 EIF1P41567 113 aaKnown RBP9.13□□□□□ -0.95
LIG3-216ENST00000593099 RPL35P42766 123 aaKnown RBP9.13□□□□□ -0.95
LIG3-216ENST00000593099 GMFBP60983 142 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 ZNF528Q3MIS6 628 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 FAM199XQ6PEV8 388 aaPredicted RBP9.13□□□□□ -0.95
LIG3-216ENST00000593099 NDUFAF7Q7L592 441 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 OVCH1Q7RTY7 1134 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 DGLUCYQ7Z3D6 616 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 YIPF7Q8N8F6 280 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 C9orf43Q8TAL5 461 aaPredicted RBP9.13□□□□□ -0.95
LIG3-216ENST00000593099 KAT8Q9H7Z6 458 aaKnown RBP9.13□□□□□ -0.95
LIG3-216ENST00000593099 SRA1Q9HD15 236 aaKnown RBP9.13□□□□□ -0.95
LIG3-216ENST00000593099 NKIRAS2Q9NYR9 191 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 SLAMF8Q9P0V8 285 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 CCL4P13236 92 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms