RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 VIPAS39Q9H9C1 493 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 FBXO34Q9NWN3 711 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 PAQR5Q9NXK6 330 aaPredicted RBP7.31□□□□□ -1.24
VPS53-214ENST00000572607 ZIM2Q9NZV7 527 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 CLCF1Q9UBD9 225 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 BTNL2Q9UIR0 455 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 ZNF337Q9Y3M9 751 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 DTNAQ9Y4J8 743 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 ZNF407Q9C0G0 2248 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 EXPH5Q8NEV8 1989 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 NPIPA5A0A0B4J1W7 369 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 C7orf72A4D263 438 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 GJE1A6NN92 205 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 KDM4EB2RXH2 506 aaPredicted RBP7.3□□□□□ -1.24
VPS53-214ENST00000572607 B4DXG7 233 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 NPIPA7E9PJI5 369 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 ANKRD28O15084 1053 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 UBDO15205 165 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 ZNF264O43296 627 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 EIF4E2O60573 245 aaKnown RBP7.3□□□□□ -1.24
VPS53-214ENST00000572607 TNFRSF21O75509 655 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 CYP7B1O75881 506 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 SYNGR4O95473 234 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 ANP32DO95626 131 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 KRT75O95678 551 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 PLGP00747 810 aaPredicted RBP7.3□□□□□ -1.24
VPS53-214ENST00000572607 IL6P05231 212 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 ALDOCP09972 364 aaKnown RBP7.3□□□□□ -1.24
VPS53-214ENST00000572607 NPIPA8P0DM63 369 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 OR12D1P0DN82 309 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 UBL4AP11441 157 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 CD33P20138 364 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 CAPN3P20807 821 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 CPOXP36551 454 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 EIF1AXP47813 144 aaKnown RBP7.3□□□□□ -1.24
VPS53-214ENST00000572607 P2RX1P51575 399 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 ZNF117Q03924 483 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 CBFBQ13951 182 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 FGFBP1Q14512 234 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 CD226Q15762 336 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 ARHGAP11BQ3KRB8 267 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 FBXL19-AS1Q494R0 122 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 SLC9B1Q4ZJI4 515 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 GPAT3Q53EU6 434 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 KLHL26Q53HC5 615 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 SAXO2Q658L1 398 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 TNFAIP8L2Q6P589 184 aaPredicted RBP7.3□□□□□ -1.24
VPS53-214ENST00000572607 ZNF621Q6ZSS3 439 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 ADGRE4PQ86SQ3 457 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 GCNT2Q8N0V5 402 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 MIER2Q8N344 545 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 GTPBP8Q8N3Z3 284 aaPredicted RBP7.3□□□□□ -1.24
VPS53-214ENST00000572607 CNEP1R1Q8N9A8 125 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 ACBD4Q8NC06 268 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 CHDHQ8NE62 594 aaPredicted RBP7.3□□□□□ -1.24
VPS53-214ENST00000572607 RFWD2Q8NHY2 731 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 MIPOL1Q8TD10 442 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 XAGE5Q8WWM1 108 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 OIT3Q8WWZ8 545 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 NEURL3Q96EH8 262 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 MAELQ96JY0 434 aaKnown RBP7.3□□□□□ -1.24
VPS53-214ENST00000572607 MARK4Q96L34 752 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 LURAP1Q96LR2 239 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 RNF145Q96MT1 663 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 C7orf26Q96N11 449 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 CCDC115Q96NT0 180 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 SDF2Q99470 211 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 PINK1Q9BXM7 581 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 KRTAP4-8Q9BYQ9 185 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 NMUR2Q9GZQ4 415 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 CACYBPQ9HB71 228 aaKnown RBP7.3□□□□□ -1.24
VPS53-214ENST00000572607 MCCC2Q9HCC0 563 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 POLE3Q9NRF9 147 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 INTS9Q9NV88 658 aaKnown RBP7.3□□□□□ -1.24
VPS53-214ENST00000572607 MED17Q9NVC6 651 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 PACSIN3Q9UKS6 424 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 MCTS1Q9ULC4 181 aaKnown RBP7.3□□□□□ -1.24
VPS53-214ENST00000572607 CARD8Q9Y2G2 431 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 ZNF175Q9Y473 711 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 WDR45Q9Y484 360 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 GPR45Q9Y5Y3 372 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 KCNE3Q9Y6H6 103 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 USH1CQ9Y6N9 552 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 GTF3C1Q12789 2109 aa7.3□□□□□ -1.24
VPS53-214ENST00000572607 NINQ8N4C6 2090 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 NAV3Q8IVL0 2385 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 TMEM247A6NEH6 219 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 SERINC4A6NH21 518 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 CCDC154A6NI56 674 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 A6NJY4 79 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 TMEM229AB2RXF0 380 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 C9JVG2 144 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 RFXANKO14593 260 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 SCN2BO60939 215 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 SMNDC1O75940 238 aaKnown RBP eCLIP7.29□□□□□ -1.24
VPS53-214ENST00000572607 TGDSO95455 350 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 TGM6O95932 706 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 CSTAP01040 98 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 PABPC4LP0CB38 370 aaKnown RBP7.29□□□□□ -1.24
VPS53-214ENST00000572607 FAM157BP0CG42 384 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms