RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 LINC01356Q8N9X3 169 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 RNF138Q8WVD3 245 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 CPNE4Q96A23 557 aaPredicted RBP9.78□□□□□ -0.84
VPS53-207ENST00000570510 PHF21BQ96EK2 531 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 VSTM2LQ96N03 204 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 VRK1Q99986 396 aaPredicted RBP9.78□□□□□ -0.84
VPS53-207ENST00000570510 NOL11Q9H8H0 719 aaKnown RBP9.78□□□□□ -0.84
VPS53-207ENST00000570510 FKRPQ9H9S5 495 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 MYOZ1Q9NP98 299 aaPredicted RBP9.78□□□□□ -0.84
VPS53-207ENST00000570510 TMEM216Q9P0N5 145 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 CES1P1Q9UKY3 287 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 WBP11Q9Y2W2 641 aaKnown RBP9.78□□□□□ -0.84
VPS53-207ENST00000570510 RNF11Q9Y3C5 154 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 TENM1Q9UKZ4 2725 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 CADP27708 2225 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 NPIPA5A0A0B4J1W7 369 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 A0A0J9YW62 118 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 TMEM89A2RUT3 159 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 CCT8L1PA6NM43 557 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 VWC2LB2RUY7 222 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 NPIPA7E9PJI5 369 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 M0R1B8 84 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 OR7A17O14581 309 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 COQ9O75208 318 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 NPIPA8P0DM63 369 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 CD40P25942 277 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 APEX1P27695 318 aaKnown RBP9.77□□□□□ -0.85
VPS53-207ENST00000570510 APOBEC3AP31941 199 aaPredicted RBP9.77□□□□□ -0.85
VPS53-207ENST00000570510 SERPINB5P36952 375 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 CLCQ05315 142 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 IFFO1Q0D2I5 559 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 CSTF3Q12996 717 aaKnown RBP9.77□□□□□ -0.85
VPS53-207ENST00000570510 MLC1Q15049 377 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 ZNF239Q16600 458 aaKnown RBP9.77□□□□□ -0.85
VPS53-207ENST00000570510 ZNF628Q5EBL2 1059 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 SGO1Q5FBB7 561 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 UGT2A3Q6UWM9 527 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 ZYG11AQ6WRX3 759 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 FCRLAQ7L513 359 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 SLC46A3Q7Z3Q1 461 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 COMMD6Q7Z4G1 85 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 ZNF100Q8IYN0 542 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 KIRREL3Q8IZU9 778 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 LILRA2Q8N149 483 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 UBE2J2Q8N2K1 259 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 GTPBP8Q8N3Z3 284 aaPredicted RBP9.77□□□□□ -0.85
VPS53-207ENST00000570510 TOR1AIP2Q8NFQ8 470 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 OR9A2Q8NGT5 310 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 OR52N5Q8NH56 324 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 FAM110BQ8TC76 370 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 ZNF675Q8TD23 568 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 RNF128Q8TEB7 428 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 FAM216AQ8WUB2 273 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 ZBTB8AQ96BR9 441 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 FBXO17Q96EF6 278 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 CNRIP1Q96F85 164 aaPredicted RBP9.77□□□□□ -0.85
VPS53-207ENST00000570510 ADGRG7Q96K78 797 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 KLHL15Q96M94 604 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 RNF145Q96MT1 663 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 JMJD8Q96S16 334 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 RBM4Q9BWF3 364 aaKnown RBP9.77□□□□□ -0.85
VPS53-207ENST00000570510 ELOVL6Q9H5J4 265 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 GP6Q9HCN6 339 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 Q9N2J8 555 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 SSU72Q9NP77 194 aaKnown RBP9.77□□□□□ -0.85
VPS53-207ENST00000570510 SIRT5Q9NXA8 310 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 NPAP1Q9NZP6 1156 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 SLC12A4Q9UP95 1085 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 ACTL7BQ9Y614 415 aa9.77□□□□□ -0.85
VPS53-207ENST00000570510 LRP5LA4QPB2 252 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 OR5H1A6NKK0 313 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 GJE1A6NN92 205 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 ZNF814B7Z6K7 855 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 NPIPB8E9PQR5 432 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 COPEO14579 308 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 SMAD9O15198 467 aaKnown RBP9.76□□□□□ -0.85
VPS53-207ENST00000570510 PLIN3O60664 434 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 SHBGP04278 402 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 MYL2P10916 166 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 KRT4P19013 534 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 MPIP34949 423 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 CHN2P52757 468 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 SNRPD2P62316 118 aaKnown RBP9.76□□□□□ -0.85
VPS53-207ENST00000570510 DUSP2Q05923 314 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 LGALS3BPQ08380 585 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 SPOCK1Q08629 439 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 TMEM44Q2T9K0 475 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 ARL13AQ5H913 290 aaPredicted RBP9.76□□□□□ -0.85
VPS53-207ENST00000570510 PEG10Q86TG7 708 aaKnown RBP9.76□□□□□ -0.85
VPS53-207ENST00000570510 TRABD2AQ86V40 505 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 SLC43A2Q8N370 569 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 FAM76AQ8TAV0 307 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.76□□□□□ -0.85
VPS53-207ENST00000570510 EXOSC8Q96B26 276 aaKnown RBP9.76□□□□□ -0.85
VPS53-207ENST00000570510 CCT7Q99832 543 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 PARD6BQ9BYG5 372 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 BPESC1Q9GZL8 116 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 IQCGQ9H095 443 aaKnown RBP9.76□□□□□ -0.85
VPS53-207ENST00000570510 ZNF696Q9H7X3 374 aa9.76□□□□□ -0.85
VPS53-207ENST00000570510 C3orf14Q9HBI5 128 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms