RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 GDF7Q7Z4P5 450 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 GALNT5Q7Z7M9 940 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 HS3ST5Q8IZT8 346 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 CYP4Z2PQ8N1L4 340 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 CLIP4Q8N3C7 705 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 ESX1Q8N693 406 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 OR4D11Q8NGI4 311 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 OR8J1Q8NGP2 316 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 OR2Y1Q8NGV0 311 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 M1APQ8TC57 530 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 TMEM239Q8WW34 195 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 TSLPQ969D9 159 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 MYDGFQ969H8 173 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 ZG16BQ96DA0 208 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 IP6K3Q96PC2 410 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 SLC38A2Q96QD8 506 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 SECISBP2Q96T21 854 aaKnown RBP7.34□□□□□ -1.23
VPS39-213ENST00000570062 NUDT9Q9BW91 350 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 LAT2Q9GZY6 243 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 MED17Q9NVC6 651 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 FAM86C1Q9NVL1 165 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 CLN6Q9NWW5 311 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 CTSFQ9UBX1 484 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 BAIAP2Q9UQB8 552 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 MED31Q9Y3C7 131 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 TPRP12270 2363 aaKnown RBP7.34□□□□□ -1.23
VPS39-213ENST00000570062 NCOR2Q9Y618 2525 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 COL5A1P20908 1838 aaPredicted RBP7.34□□□□□ -1.24
VPS39-213ENST00000570062 TNRC6BQ9UPQ9 1833 aaKnown RBP7.34□□□□□ -1.24
VPS39-213ENST00000570062 TRIOO75962 3097 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 PTPRZ1P23471 2315 aaPredicted RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 CACNA1EQ15878 2313 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 A0A087WUU8 490 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 TRBV4-1A0A0J9YWV2 114 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 MYOCOSA0A1B0GUC4 107 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 TRIM64CA6NLI5 447 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 CPSF4LA6NMK7 179 aaKnown RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 ZAR1LA6NP61 321 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 A8MUA0 341 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 ALG1L2C9J202 215 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 H3BN98 237 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 PEX12O00623 359 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 GNB5O14775 395 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 PLD2O14939 933 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 TSPAN2O60636 221 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 SEC24DO94855 1032 aaPredicted RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 OR6B1O95007 311 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 UTS2O95399 124 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 ANGPTL1O95841 491 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 EPPINO95925 133 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 GNAO1P09471 354 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 LINGO3P0C6S8 592 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 HOXB4P17483 251 aaPredicted RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 PGCP20142 388 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 MMP11P24347 488 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 CRHBPP24387 322 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 EEF1B2P24534 225 aaKnown RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 HTR3AP46098 478 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 RFX3P48380 749 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 GSSP48637 474 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 SLC9A3P48764 834 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 NR0B1P51843 470 aaKnown RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 ZNF136P52737 540 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 LIMK1P53667 647 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 SUMO3P55854 103 aaPredicted RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 CTBP2P56545 445 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 SNRPGP62308 76 aaKnown RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 PRKCDQ05655 676 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 CD47Q08722 323 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 C17orf67Q0P5P2 114 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 SPEM2Q0P670 501 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 PPP1R8Q12972 351 aaKnown RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 TUBA3CQ13748 450 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 APOFQ13790 326 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 SSPNQ14714 243 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 MAD2L1BPQ15013 274 aaPredicted RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 PTGES3Q15185 160 aaKnown RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 TRIP6Q15654 476 aaKnown RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 MAPK14Q16539 360 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 SLC25A30Q5SVS4 291 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 PRAMEF17Q5VTA0 474 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 SLX4IPQ5VYV7 408 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 WBP2NLQ6ICG8 309 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 TCEAL6Q6IPX3 200 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 SLC27A4Q6P1M0 643 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 BORAQ6PGQ7 559 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 ZNF773Q6PK81 442 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 KLHL17Q6TDP4 642 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 NPSR1Q6W5P4 371 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 TMPRSS11FQ6ZWK6 438 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 WDR53Q7Z5U6 358 aaPredicted RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 RBM45Q8IUH3 476 aaKnown RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 ALDH16A1Q8IZ83 802 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 ZNF614Q8N883 585 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 ZNF441Q8N8Z8 693 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 SLC38A9Q8NBW4 561 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 SIMC1Q8NDZ2 872 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 NFAM1Q8NET5 270 aaPredicted RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 OR9Q2Q8NGE9 314 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 RHOXF1Q8NHV9 184 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms