RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 IGFBP1P08833 259 aaPredicted RBP5.02□□□□□ -1.61
VPS13C-209ENST00000560637 TSPAN19P0C672 248 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 HSD17B1P14061 328 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 HK1P19367 917 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 INPP1P49441 399 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 RRADP55042 308 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 WNT3P56703 355 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 SLC26A5P58743 744 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 CTXN1P60606 82 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 GMFBP60983 142 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 TLE3Q04726 772 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 SQSTM1Q13501 440 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 OR1Q1Q15612 314 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 C3AR1Q16581 482 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 PRSS53Q2L4Q9 553 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 COL28A1Q2UY09 1125 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 CBLN3Q6UW01 205 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 XKR5Q6UX68 686 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 ASRGL1Q7L266 308 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 NKAIN4Q8IVV8 208 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 ADGRG5Q8IZF4 528 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 FANK1Q8TC84 345 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 TMEM255BQ8WV15 326 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 COQ8BQ96D53 544 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 MVB12AQ96EY5 273 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 SLC41A2Q96JW4 573 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF300Q96RE9 604 aaPredicted RBP5.02□□□□□ -1.61
VPS13C-209ENST00000560637 RBM24Q9BX46 236 aaKnown RBP5.02□□□□□ -1.61
VPS13C-209ENST00000560637 C1QTNF6Q9BXI9 259 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 ASPNQ9BXN1 380 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 C12orf49Q9H741 205 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 RNF121Q9H920 327 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 TIMMDC1Q9NPL8 285 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 ING3Q9NXR8 418 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 MYRFQ9Y2G1 1151 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 KIF26AQ9ULI4 1882 aaPredicted RBP5.02□□□□□ -1.61
VPS13C-209ENST00000560637 PIP5K1CO60331 668 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 PPP1R3DO95685 299 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 NPPAP01160 153 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 ICAM2P13598 275 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 ABCD3P28288 659 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 HOXC12P31275 282 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 PCGF2P35227 344 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 ID4P47928 161 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 EMDP50402 254 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 CTBP2P56545 445 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 PMP22Q01453 160 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 POU3F1Q03052 451 aaPredicted RBP5.02□□□□□ -1.61
VPS13C-209ENST00000560637 MELKQ14680 651 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 QPRTQ15274 297 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 PRTGQ2VWP7 1150 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 AGAP7PQ5VUJ5 663 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 FRRS1Q6ZNA5 592 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 BCDIN3DQ7Z5W3 292 aaKnown RBP5.02□□□□□ -1.61
VPS13C-209ENST00000560637 ANKRD37Q7Z713 158 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 CLVS1Q8IUQ0 354 aaPredicted RBP5.02□□□□□ -1.61
VPS13C-209ENST00000560637 MSRB3Q8IXL7 192 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 SDR9C7Q8NEX9 313 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 OR52E2Q8NGJ4 325 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 OR13C2Q8NGS9 318 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 NT5CQ8TCD5 201 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 SNX33Q8WV41 574 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 RORBQ92753 470 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 EXTL1Q92935 676 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 SCARF2Q96GP6 870 aaPredicted RBP5.02□□□□□ -1.61
VPS13C-209ENST00000560637 ZC3H10Q96K80 434 aaKnown RBP5.02□□□□□ -1.61
VPS13C-209ENST00000560637 MUS81Q96NY9 551 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 AGAP4Q96P64 663 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 CCM2LQ9NUG4 571 aaPredicted RBP5.02□□□□□ -1.61
VPS13C-209ENST00000560637 DCAF13Q9NV06 445 aaKnown RBP5.02□□□□□ -1.61
VPS13C-209ENST00000560637 GRHPRQ9UBQ7 328 aa5.02□□□□□ -1.61
VPS13C-209ENST00000560637 COL4A4P53420 1690 aaPredicted RBP5.02□□□□□ -1.61
VPS13C-209ENST00000560637 A0A1B0GWA3 101 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 TRAPPC13A5PLN9 417 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 TVP23AA6NH52 213 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 EEF1E1-BLOC1S5C9J1V9 151 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 MKRN2OSH3BPM6 223 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 M0R3G1 203 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 EEF1E1O43324 174 aaKnown RBP5.01□□□□□ -1.61
VPS13C-209ENST00000560637 MGRN1O60291 552 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 SYNGR4O95473 234 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 BCL10O95999 233 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF823P16415 610 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 ACVR2AP27037 513 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 ELK4P28324 431 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 HSPA13P48723 471 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 BLVRAP53004 296 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 CSNK2BP67870 215 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 MXD1Q05195 221 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 NPRL3Q12980 569 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 MAPK14Q16539 360 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 WIPI1Q5MNZ9 446 aaPredicted RBP5.01□□□□□ -1.61
VPS13C-209ENST00000560637 ACER2Q5QJU3 275 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 PODNL1Q6PEZ8 512 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 KLHL17Q6TDP4 642 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF100Q8IYN0 542 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 BEST3Q8N1M1 668 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 GALNT16Q8N428 558 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 ZFP41Q8N8Y5 198 aa5.01□□□□□ -1.61
VPS13C-209ENST00000560637 CCDC168Q8NDH2 2452 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms