RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 APTXQ7Z2E3 356 aaKnown RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 C16orf62Q7Z3J2 963 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 DHDDSQ86SQ9 333 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 SERPINA9Q86WD7 417 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 FGFRL1Q8N441 504 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 CLDN19Q8N6F1 224 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 KIR3DL3Q8N743 410 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 CSNK1A1LQ8N752 337 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 ATP6V0D2Q8N8Y2 350 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 Q8N9G6 341 aaPredicted RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 SYT14Q8NB59 555 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 BHLHE23Q8NDY6 225 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 OR4D9Q8NGE8 314 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 OR13C2Q8NGS9 318 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 TYMSOSQ8TAI1 123 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 TRMT10AQ8TBZ6 339 aaKnown RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 VN1R17PQ8TDU5 208 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 GTSF1Q8WW33 167 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 RLN3Q8WXF3 142 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 ZBED6CLQ96FA7 236 aaPredicted RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 SLC41A3Q96GZ6 507 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 TMEM80Q96HE8 168 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 PPP1R16AQ96I34 528 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 C9orf85Q96MD7 179 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 SLC38A2Q96QD8 506 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 MTMR9Q96QG7 549 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 CYP2S1Q96SQ9 504 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 NPY6RQ99463 290 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 ZBTB18Q99592 522 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 CCT7Q99832 543 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 OMDQ99983 421 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 SLC30A2Q9BRI3 323 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 TRIM51Q9BSJ1 452 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 FEM1AQ9BSK4 669 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 SPATA16Q9BXB7 569 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 CRNKL1Q9BZJ0 848 aaKnown RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 TRIM6Q9C030 488 aaPredicted RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 OPN3Q9H1Y3 402 aaPredicted RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 RHBGQ9H310 441 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 LRRN3Q9H3W5 708 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 VCPKMTQ9H867 229 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 METTL7AQ9H8H3 244 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 POLD4Q9HCU8 107 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 FANCFQ9NPI8 374 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 EXOSC3Q9NQT5 275 aaKnown RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 POLE4Q9NR33 117 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 EHFQ9NZC4 300 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 GALPQ9UBC7 116 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 RSPH14Q9UHP6 348 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 RIMS3Q9UJD0 308 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 ANGPTL2Q9UKU9 493 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 CDH9Q9ULB4 789 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 MRPS7Q9Y2R9 242 aaKnown RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 POLDIP2Q9Y2S7 368 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 AK6Q9Y3D8 172 aaKnown RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 TIMM10BQ9Y5J6 103 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 MAD1L1Q9Y6D9 718 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 RLFQ13129 1914 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 PHF3Q92576 2039 aaKnown RBP1.25□□□□□ -2.21
USP3-209ENST00000558925 SNED1Q8TER0 1413 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 FRMPD4Q14CM0 1322 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 KIF16BQ96L93 1317 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 TRAV26-1A0A087WT03 109 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 A0A087WWV3 80 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 A0A1B0GVL5 298 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 PP2D1A8MPX8 630 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 E9PLD3 99 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 NBR2O15453 112 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 RGS16O15492 202 aaPredicted RBP1.25□□□□□ -2.21
USP3-209ENST00000558925 TAPBPO15533 448 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 TRIM3O75382 744 aaPredicted RBP1.25□□□□□ -2.21
USP3-209ENST00000558925 GPX5O75715 221 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 RHOBTB1O94844 696 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 DIRAS1O95057 198 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 GJB5O95377 273 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 PGK1P00558 417 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 OPN1MWP04001 364 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 CAPN1P07384 714 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 SNRPCP09234 159 aaKnown RBP1.25□□□□□ -2.21
USP3-209ENST00000558925 GIG44P09565 113 aaPredicted RBP1.25□□□□□ -2.21
USP3-209ENST00000558925 UQCRFS1P1P0C7P4 283 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 ZNF853P0CG23 659 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 OPN1MW2P0DN77 364 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 OPN1MW3P0DN78 364 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 PNMTP11086 282 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 GATA1P15976 413 aaPredicted RBP1.25□□□□□ -2.21
USP3-209ENST00000558925 POLR2EP19388 210 aaKnown RBP1.25□□□□□ -2.21
USP3-209ENST00000558925 AZU1P20160 251 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 GDI1P31150 447 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 CD80P33681 288 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 LEPP41159 167 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 MAGEA9P43362 315 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 AP3M2P53677 418 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 ATP1B3P54709 279 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 SEC61GP60059 68 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 RPS14P62263 151 aaKnown RBP1.25□□□□□ -2.21
USP3-209ENST00000558925 BEX3Q00994 111 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 OTUD4Q01804 1114 aaKnown RBP1.25□□□□□ -2.21
USP3-209ENST00000558925 FGL1Q08830 312 aa1.25□□□□□ -2.21
USP3-209ENST00000558925 LRRC74AQ0VAA2 488 aa1.25□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms