RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 SLC7A5P2Q9GIP4 190 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 PPA2Q9H2U2 334 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 WDR26Q9H7D7 661 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 MYEF2Q9P2K5 600 aaKnown RBP10.56□□□□□ -0.72
LDLR-208ENST00000558518 IL36AQ9UHA7 158 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 CBLCQ9ULV8 474 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 KIAA0100Q14667 2235 aaKnown RBP10.56□□□□□ -0.72
LDLR-208ENST00000558518 SPAG17Q6Q759 2223 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 TEX51A0A1B0GUA7 166 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 OR52A4PA6NMU1 304 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 FOXE1O00358 373 aaPredicted RBP10.56□□□□□ -0.72
LDLR-208ENST00000558518 SURF4O15260 269 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 MT-ND5P03915 603 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 EDNRAP25101 427 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 PDX1P52945 283 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 TAS2R38P59533 333 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 NTHL1P78549 312 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 HTR4Q13639 388 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 SLC9A5Q14940 896 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 MFSD13AQ14CX5 517 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 GPR139Q6DWJ6 353 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 STPG2Q8N412 459 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 SDR9C7Q8NEX9 313 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 C2orf15Q8WU43 125 aaKnown RBP10.56□□□□□ -0.72
LDLR-208ENST00000558518 TNFAIP8L1Q8WVP5 186 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 OR7D2Q96RA2 312 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 MNTQ99583 582 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 CA10Q9NS85 328 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 C20orf141Q9NUB4 165 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 RPS6KB2Q9UBS0 482 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 SLC23A2Q9UGH3 650 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 CENPVL1A0A0U1RR11 272 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 ABHD14A-ACY1A0A1B0GW23 586 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 A8MVJ9 347 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 IDSB3KWA1 339 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 FLRT2O43155 660 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 TEAD1P28347 426 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 BTCP35070 178 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 RPL4P36578 427 aaKnown RBP10.56□□□□□ -0.72
LDLR-208ENST00000558518 CCR8P51685 355 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 GSG1Q2KHT4 349 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 YOD1Q5VVQ6 348 aaPredicted RBP10.56□□□□□ -0.72
LDLR-208ENST00000558518 FCRLAQ7L513 359 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 DNAAF1Q8NEP3 725 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 OR52I2Q8NH67 350 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 CDS1Q92903 461 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 CHFRQ96EP1 664 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 KCNJ15Q99712 375 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 B3GNT4Q9C0J1 378 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 FGF20Q9NP95 211 aaPredicted RBP10.56□□□□□ -0.72
LDLR-208ENST00000558518 EMC7Q9NPA0 242 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 HCFC2Q9Y5Z7 792 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 FKBP7Q9Y680 259 aa10.56□□□□□ -0.72
LDLR-208ENST00000558518 TRPM6Q9BX84 2022 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 SCN10AQ9Y5Y9 1956 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 URB1O60287 2271 aaKnown RBP10.55□□□□□ -0.72
LDLR-208ENST00000558518 F8A1P23610 371 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 BSGP35613 385 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 CRMP1Q14194 572 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 FNDC3BQ53EP0 1204 aaKnown RBP10.55□□□□□ -0.72
LDLR-208ENST00000558518 TMEM255AQ5JRV8 349 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 TMEM215Q68D42 235 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 FAM122CQ6P4D5 195 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 METAP1DQ6UB28 335 aaPredicted RBP10.55□□□□□ -0.72
LDLR-208ENST00000558518 FRRS1Q6ZNA5 592 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 HDDC2Q7Z4H3 204 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 TMED4Q7Z7H5 227 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 IFNL1Q8IU54 200 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 C10orf53Q8N6V4 93 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 ARIH2OSQ8N7S6 290 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 PLA2G15Q8NCC3 412 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 SUN3Q8TAQ9 357 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 APOBEC4Q8WW27 367 aaKnown RBP10.55□□□□□ -0.72
LDLR-208ENST00000558518 OR2M2Q96R28 347 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 LYSMD1Q96S90 227 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 CD180Q99467 661 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 OR1A2Q9Y585 309 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 A0A1B0GVI7 797 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 FAM86C2PA6NEL3 165 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 FAM25EA8MYX2 175 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 PDCD5O14737 125 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 STX11O75558 287 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 LAMP2P13473 410 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 BTN3A2P78410 334 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 KCNAB1Q14722 419 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 NNATQ16517 81 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 NDUFAF7Q7L592 441 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 GDF7Q7Z4P5 450 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 AMZ2Q86W34 360 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 OR4C6Q8NH72 309 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 YIPF5Q969M3 257 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 NUS1Q96E22 293 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 SGTBQ96EQ0 304 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 ZC3HAV1LQ96H79 300 aaKnown RBP10.55□□□□□ -0.72
LDLR-208ENST00000558518 HEXA-AS1Q9H8Q6 139 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 RNF186Q9NXI6 227 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 WDR45Q9Y484 360 aa10.55□□□□□ -0.72
LDLR-208ENST00000558518 RANBP2P49792 3224 aaKnown RBP10.55□□□□□ -0.72
LDLR-208ENST00000558518 TRBV2A0A0J9YWF9 115 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 LINC00862A6NCI5 91 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms