RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 IKBIPQ70UQ0 350 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 GET4Q7L5D6 327 aaPredicted RBP11.47□□□□□ -0.57
LDLR-205ENST00000557933 LINGO2Q7L985 606 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 KLHDC8AQ8IYD2 350 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 POGLUT1Q8NBL1 392 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 OR2T33Q8NG76 320 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 ZNF671Q8TAW3 534 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 GHSRQ92847 366 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 SIPA1Q96FS4 1042 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 BTBD1Q9H0C5 482 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 ADAP2Q9NPF8 381 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 BABAM2Q9NXR7 383 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 KLK11Q9UBX7 282 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 RCE1Q9Y256 329 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 CDHR4A6H8M9 788 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 GPR171O14626 319 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 PCDH8O95206 1070 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 IL9P15248 144 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 TEAD1P28347 426 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 AP2S1P53680 142 aaPredicted RBP11.47□□□□□ -0.57
LDLR-205ENST00000557933 ZP1P60852 638 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 MAPK14Q16539 360 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 STPG1Q5TH74 334 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 TIGD3Q6B0B8 471 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 SLC25A25Q6KCM7 469 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 ZNF620Q6ZNG0 422 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 LUZP2Q86TE4 346 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 ACOT4Q8N9L9 421 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 BOLLQ8N9W6 283 aaKnown RBP11.47□□□□□ -0.57
LDLR-205ENST00000557933 GNPDA2Q8TDQ7 276 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 RBP7Q96R05 134 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 PIGUQ9H490 435 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 C12orf4Q9NQ89 552 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 SPHK1Q9NYA1 384 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 RWDD3Q9Y3V2 267 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 SEC16AO15027 2179 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 IGLON5A6NGN9 336 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 ACOD1A6NK06 481 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 CXCL14O95715 111 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 LINC00271P0C7V0 271 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 KHKP50053 298 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 MAP2K6P52564 334 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 TSPAN5P62079 268 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 CSNK1G2P78368 415 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 GRK1Q15835 563 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 ACSM3Q53FZ2 586 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 NHLRC1Q6VVB1 395 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 RTL10Q7L3V2 364 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 ZBTB44Q8NCP5 570 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 OR52B4Q8NGK2 314 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 KIAA1143Q96AT1 154 aaPredicted RBP11.46□□□□□ -0.57
LDLR-205ENST00000557933 OR14A2Q96R54 314 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 DPAGT1Q9H3H5 408 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 CYSLTR2Q9NS75 346 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 PRKAG2Q9UGJ0 569 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 ZMIZ1Q9ULJ6 1067 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 A0A1W2PPV9 198 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 LRIT2A6NDA9 550 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 MEIS3P1A6NDR6 274 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 H3BUI4 141 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 SGK494L7N484 410 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 MAN2B1O00754 1011 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 PAK4O96013 591 aaPredicted RBP11.46□□□□□ -0.57
LDLR-205ENST00000557933 MAT2AP31153 395 aaKnown RBP11.46□□□□□ -0.57
LDLR-205ENST00000557933 KIAA1024LP59773 190 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 ST3GAL3Q11203 375 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 CRMP1Q14194 572 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 KCNAB1Q14722 419 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 ZNF658BQ4V348 819 aaPredicted RBP11.46□□□□□ -0.57
LDLR-205ENST00000557933 HBMQ6B0K9 141 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 METTL3Q86U44 580 aaKnown RBP11.46□□□□□ -0.57
LDLR-205ENST00000557933 OAFQ86UD1 273 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 OR51Q1Q8NH59 317 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 FANK1Q8TC84 345 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 ADAMTS15Q8TE58 950 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 PTP4A1Q93096 173 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 RFKQ969G6 155 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 YIPF5Q969M3 257 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 UBE2E3Q969T4 207 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 WDR34Q96EX3 536 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 SLC35A4Q96G79 324 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 ZC3HAV1LQ96H79 300 aaKnown RBP11.46□□□□□ -0.57
LDLR-205ENST00000557933 CLEC4MQ9H2X3 399 aaPredicted RBP11.46□□□□□ -0.57
LDLR-205ENST00000557933 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.46□□□□□ -0.57
LDLR-205ENST00000557933 CA10Q9NS85 328 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 ELF5Q9UKW6 265 aaPredicted RBP11.46□□□□□ -0.57
LDLR-205ENST00000557933 ENTPD4Q9Y227 616 aa11.46□□□□□ -0.57
LDLR-205ENST00000557933 COL4A3Q01955 1670 aa11.46□□□□□ -0.58
LDLR-205ENST00000557933 ZNF593O00488 134 aaPredicted RBP11.46□□□□□ -0.58
LDLR-205ENST00000557933 SOX30O94993 753 aa11.46□□□□□ -0.58
LDLR-205ENST00000557933 PPP1R3DO95685 299 aa11.46□□□□□ -0.58
LDLR-205ENST00000557933 NDUFV2P19404 249 aa11.46□□□□□ -0.58
LDLR-205ENST00000557933 ST8SIA6P61647 398 aa11.46□□□□□ -0.58
LDLR-205ENST00000557933 BTN3A2P78410 334 aa11.46□□□□□ -0.58
LDLR-205ENST00000557933 SLC9A5Q14940 896 aa11.46□□□□□ -0.58
LDLR-205ENST00000557933 TMEM240Q5SV17 173 aa11.46□□□□□ -0.58
LDLR-205ENST00000557933 DCUN1D3Q8IWE4 304 aa11.46□□□□□ -0.58
LDLR-205ENST00000557933 OR8K3Q8NH51 312 aa11.46□□□□□ -0.58
LDLR-205ENST00000557933 COQ8AQ8NI60 647 aa11.46□□□□□ -0.58
LDLR-205ENST00000557933 ABHD4Q8TB40 342 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms