RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	TRIM23	P36406	574 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	LIM2	P55344	173 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	EIF2B1	Q14232	305 aa	Known RBP	4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	HEPHL1	Q6MZM0	1159 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	RPL13AP3	Q6NVV1	102 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	CALHM3	Q86XJ0	350 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	GLB1L2	Q8IW92	636 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	KLHDC8A	Q8IYD2	350 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	TCTE3	Q8IZS6	198 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	OR6F1	Q8NGZ6	308 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	PHOSPHO1	Q8TCT1	267 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	ST8SIA4	Q92187	359 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	WBP2	Q969T9	261 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZNF416	Q9BWM5	594 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	NKX6-2	Q9C056	277 aa	Predicted RBP	4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	NIPAL2	Q9H841	368 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	UBR3	Q6ZT12	1888 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	COL11A1	P12107	1806 aa	Predicted RBP	4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	SHROOM3	Q8TF72	1996 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	MBLAC1	A4D2B0	266 aa	Predicted RBP	4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	IGLON5	A6NGN9	336 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZAR1L	A6NP61	321 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005		B4DGG1	531 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	DCN	P07585	359 aa	Known RBP	4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	DRD2	P14416	443 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	IL1RN	P18510	177 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	TUBG1	P23258	451 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	NR0B1	P51843	470 aa	Known RBP	4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	MGAT3	Q09327	533 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	NKAPL	Q5M9Q1	402 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	SLX4IP	Q5VYV7	408 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	SIGIRR	Q6IA17	410 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	TEX261	Q6UWH6	196 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	MSRB3	Q8IXL7	192 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	OR2L2	Q8NH16	312 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	SETD7	Q8WTS6	366 aa	Known RBP	4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	TM4SF18	Q96CE8	201 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	DHRS9	Q9BPW9	319 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	C1QTNF2	Q9BXJ5	285 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	OR52D1	Q9H346	318 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	AUNIP	Q9H7T9	357 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	FBXL2	Q9UKC9	423 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	NAALAD2	Q9Y3Q0	740 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	IER3IP1	Q9Y5U9	82 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005		U3KQ87	197 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	PAK4	O96013	591 aa	Predicted RBP	4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	RAF1	P04049	648 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	INHA	P05111	366 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	TIMP2	P16035	220 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	CBR1	P16152	277 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	NFYA	P23511	347 aa	Predicted RBP	4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	CD6	P30203	668 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	FRK	P42685	505 aa	Predicted RBP	4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	KIAA1024L	P59773	190 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	SP3	Q02447	781 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	LTB	Q06643	244 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZNF169	Q14929	603 aa	Predicted RBP	4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	EXOSC7	Q15024	291 aa	Known RBP	4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	SSX1	Q16384	188 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZNF674	Q2M3X9	581 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	SYT14P1	Q58G82	188 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	KANSL1	Q7Z3B3	1105 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	NLRP8	Q86W28	1048 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	REM2	Q8IYK8	340 aa	Predicted RBP	4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	OR52B4	Q8NGK2	314 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	ANGPTL6	Q8NI99	470 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	ZFPM2	Q8WW38	1151 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	SGTB	Q96EQ0	304 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	RBM18	Q96H35	190 aa	Known RBP	4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	JSRP1	Q96MG2	331 aa	Predicted RBP	4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	ACOXL	Q9NUZ1	547 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	BABAM2	Q9NXR7	383 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	KCMF1	Q9P0J7	381 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	DEC1	Q9P2X7	70 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	ERVK-19	Q9WJR5	959 aa		4.67	□□□□□ -1.66
SYNE2-223	ENST00000557005	UPK1A	O00322	258 aa		4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	HMGN4	O00479	90 aa		4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	SGCE	O43556	437 aa		4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	LDB3	O75112	727 aa		4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	LDOC1	O95751	146 aa	Predicted RBP	4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	SOD2	P04179	222 aa		4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	ASGR2	P07307	311 aa		4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	MSL3P1	P0C860	447 aa		4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	TRAPPC2	P0DI81	140 aa		4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	TRAPPC2B	P0DI82	140 aa		4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	CRYBB2	P43320	205 aa		4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	OR3A2	P47893	321 aa		4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	CSNK1D	P48730	415 aa		4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	P2RX3	P56373	397 aa		4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	CLRN1	P58418	232 aa		4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	SIM1	P81133	766 aa	Predicted RBP	4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	OC90	Q02509	493 aa	Predicted RBP	4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	TCEAL5	Q5H9L2	206 aa		4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	LY6G5C	Q5SRR4	150 aa		4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	TIGD3	Q6B0B8	471 aa		4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	GDF7	Q7Z4P5	450 aa		4.66	□□□□□ -1.66
SYNE2-223	ENST00000557005	SFXN5	Q8TD22	340 aa		4.66	□□□□□ -1.66

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