RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 MYEF2Q9P2K5 600 aaKnown RBP13.85□□□□□ -0.19
CUX1-215ENST00000556210 EXOSC1Q9Y3B2 195 aaKnown RBP13.85□□□□□ -0.19
CUX1-215ENST00000556210 GXYLT2A0PJZ3 443 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 SEMA4FO95754 770 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 SCG5P05408 212 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 CLUP10909 449 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 UGT2B7P16662 529 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 PRKCAP17252 672 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 HNRNPA2B1P22626 353 aaKnown RBP13.84□□□□□ -0.19
CUX1-215ENST00000556210 EIF1AXP47813 144 aaKnown RBP13.84□□□□□ -0.19
CUX1-215ENST00000556210 MVDP53602 400 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 PPP3R1P63098 170 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 DUSP2Q05923 314 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 SQSTM1Q13501 440 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 TOMM20Q15388 145 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 HHIPQ96QV1 700 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 TNFRSF13CQ96RJ3 184 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 TCEAL2Q9H3H9 227 aaPredicted RBP13.84□□□□□ -0.19
CUX1-215ENST00000556210 A4GALTQ9NPC4 353 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 IER3IP1Q9Y5U9 82 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 TDRD6O60522 2096 aaKnown RBP13.84□□□□□ -0.19
CUX1-215ENST00000556210 TRAPPC13A5PLN9 417 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 SHC1P29353 583 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 HOXD11P31277 338 aaPredicted RBP13.84□□□□□ -0.19
CUX1-215ENST00000556210 RPS5P46782 204 aaKnown RBP13.84□□□□□ -0.19
CUX1-215ENST00000556210 MAZP56270 477 aaKnown RBP13.84□□□□□ -0.19
CUX1-215ENST00000556210 ADAM15Q13444 863 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 OR1Q1Q15612 314 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 OR6C4Q8NGE1 309 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 TMEM163Q8TC26 289 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 AKAP1Q92667 903 aaKnown RBP eCLIP13.84□□□□□ -0.19
CUX1-215ENST00000556210 KLHDC7BQ96G42 594 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 SLC25A18Q9H1K4 315 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 CHST8Q9H2A9 424 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 HHATLQ9HCP6 504 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 OR6C2Q9NZP2 312 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 CPNE7Q9UBL6 633 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 ERVK-19Q9WJR5 959 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 MCIDASD6RGH6 385 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 DOK2O60496 412 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 MT-ND5P03915 603 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 HBQ1P09105 142 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 CD3GP09693 182 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 TEAD1P28347 426 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 MLLT3P42568 568 aaPredicted RBP13.84□□□□□ -0.19
CUX1-215ENST00000556210 SLC1A3P43003 542 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 TMPRSS9Q7Z410 1059 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 GDF7Q7Z4P5 450 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 LNX2Q8N448 690 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 TSTD1Q8NFU3 115 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 C1orf216Q8TAB5 229 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 FAM3CQ92520 227 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 MSANTD3Q96H12 275 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 ADAD1Q96M93 576 aaKnown RBP13.84□□□□□ -0.19
CUX1-215ENST00000556210 GSDMCQ9BYG8 508 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 SLITRK2Q9H156 845 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 PRTFDC1Q9NRG1 225 aa13.84□□□□□ -0.19
CUX1-215ENST00000556210 ZNF443Q9Y2A4 671 aaPredicted RBP13.84□□□□□ -0.19
CUX1-215ENST00000556210 ASXL3Q9C0F0 2248 aa13.83□□□□□ -0.19
CUX1-215ENST00000556210 HCRTR2O43614 444 aa13.83□□□□□ -0.19
CUX1-215ENST00000556210 KLHL18O94889 574 aa13.83□□□□□ -0.19
CUX1-215ENST00000556210 OPN1LWP04000 364 aa13.83□□□□□ -0.19
CUX1-215ENST00000556210 F3P13726 295 aa13.83□□□□□ -0.19
CUX1-215ENST00000556210 PTGS2P35354 604 aa13.83□□□□□ -0.19
CUX1-215ENST00000556210 CLDN12P56749 244 aa13.83□□□□□ -0.19
CUX1-215ENST00000556210 FGL2Q14314 439 aa13.83□□□□□ -0.19
CUX1-215ENST00000556210 GFOD2Q3B7J2 385 aa13.83□□□□□ -0.19
CUX1-215ENST00000556210 NLRP8Q86W28 1048 aa13.83□□□□□ -0.19
CUX1-215ENST00000556210 OR13H1Q8NG92 308 aa13.83□□□□□ -0.19
CUX1-215ENST00000556210 TSEN15Q8WW01 171 aaKnown RBP13.83□□□□□ -0.19
CUX1-215ENST00000556210 PCNPQ8WW12 178 aaKnown RBP13.83□□□□□ -0.19
CUX1-215ENST00000556210 C4orf36Q96KX1 117 aa13.83□□□□□ -0.19
CUX1-215ENST00000556210 GON7Q9BXV9 100 aa13.83□□□□□ -0.19
CUX1-215ENST00000556210 HDAC8Q9BY41 377 aa13.83□□□□□ -0.19
CUX1-215ENST00000556210 LOC100509620A0A075B734 347 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 TVP23AA6NH52 213 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 ZNF670-ZNF695F2Z2N8 137 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 H7C1C5 153 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 DNAJB6O75190 326 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 LGI1O95970 557 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 TRHRP34981 398 aaPredicted RBP13.83□□□□□ -0.2
CUX1-215ENST00000556210 CD79BP40259 229 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 LCN6P62502 163 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 ERVK-25P63136 954 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 RHAGQ02094 409 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 FAPQ12884 760 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 CRMP1Q14194 572 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 SFRP4Q6FHJ7 346 aaPredicted RBP13.83□□□□□ -0.2
CUX1-215ENST00000556210 RFPL4BQ6ZWI9 263 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 LINC00471Q8N535 108 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 ZNF676Q8N7Q3 588 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 CNOT9Q92600 299 aaKnown RBP13.83□□□□□ -0.2
CUX1-215ENST00000556210 TOE1Q96GM8 510 aaKnown RBP13.83□□□□□ -0.2
CUX1-215ENST00000556210 GPA33Q99795 319 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 A4GNTQ9UNA3 340 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 ALG5Q9Y673 324 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 TRBV2A0A0J9YWF9 115 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 SCO2O43819 266 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 PSMA3P25788 255 aa13.83□□□□□ -0.2
CUX1-215ENST00000556210 ADH7P40394 386 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms