RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 KIRREL2Q6UWL6 708 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 HSDL2Q6YN16 418 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 KRT77Q7Z794 578 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 GALNT15Q8N3T1 639 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 TEX47Q8TBZ9 253 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 TMEM239Q8WW34 195 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 ADOQ96SZ5 270 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 DOK1Q99704 481 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 TSSK6Q9BXA6 273 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 POLE3Q9NRF9 147 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 ZNF223Q9UK11 482 aaPredicted RBP11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 CNOT3O75175 753 aaKnown RBP11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 SP9P0CG40 484 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 ZNF182P17025 639 aaPredicted RBP11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 TSPAN7P41732 249 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 PCYT1AP49585 367 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 ELAVL1Q15717 326 aaKnown RBP11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 ZNF141Q15928 474 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 RPL3LQ92901 407 aaKnown RBP11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 ADIPOR1Q96A54 375 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 SAMD8Q96LT4 415 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 SLC25A19Q9HC21 320 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 TBC1D23Q9NUY8 699 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 PRODH2Q9UF12 536 aa11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 TESQ9UGI8 421 aaKnown RBP11.73□□□□□ -0.53
VIPAS39-206ENST00000553888 CSTAP01040 98 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 ZGLP1P0C6A0 271 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 CKMT1AP12532 417 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 ACVR2AP27037 513 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 ST13P50502 369 aaKnown RBP11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 NR0B1P51843 470 aaKnown RBP11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 SPCS2Q15005 226 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 SLC23A3Q6PIS1 610 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 PAQR6Q6TCH4 344 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 CBLN3Q6UW01 205 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 LINC00471Q8N535 108 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 OR13C2Q8NGS9 318 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 THAP3Q8WTV1 239 aaPredicted RBP11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 LRR1Q96L50 414 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 ZNF578Q96N58 590 aaPredicted RBP11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 PELOQ9BRX2 385 aaKnown RBP11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 G6PC3Q9BUM1 346 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 ANKRD19PQ9H560 264 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 CCNB1IP1Q9NPC3 277 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 SIDT1Q9NXL6 827 aaKnown RBP11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 CLEC2DQ9UHP7 191 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 RARRES3Q9UL19 164 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 TRAV27A0A087WT01 109 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 A0A0B4J2E0 115 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 A0A1B0GX12 115 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 LRRN3E7EW58 273 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 M0R082 166 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 TOX3O15405 576 aaPredicted RBP11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 AHCYL1O43865 530 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 CER1O95813 267 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 ANKRD34CP0C6C1 535 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 ADORA3P0DMS8 318 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 ZNF28P17035 718 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 GSTM3P21266 225 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 FPR3P25089 353 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 TTKP33981 857 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 RORAP35398 523 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 LIPAP38571 399 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 CLDN6P56747 220 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 SNRPGP62308 76 aaKnown RBP11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 ACY1Q03154 408 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 SQSTM1Q13501 440 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 NKAIN1Q4KMZ8 207 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 CCDC157Q569K6 752 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 SYT14P1Q58G82 188 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 ZNF620Q6ZNG0 422 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 RASSF6Q6ZTQ3 369 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 SHFQ7M4L6 423 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 ERI1Q8IV48 349 aaKnown RBP11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 OR7G1Q8NGA0 311 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 NAT6Q93015 286 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 OR5M11Q96RB7 305 aa11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 GFM1Q96RP9 751 aaKnown RBP11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 MKKSQ9NPJ1 570 aaPredicted RBP11.72□□□□□ -0.53
VIPAS39-206ENST00000553888 C2orf92A0A1B0GVN3 265 aa11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 SERINC4A6NH21 518 aa11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 CCL4P13236 92 aa11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 ZNF16P17020 682 aaPredicted RBP11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 GALNSP34059 522 aa11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 IFNGR2P38484 337 aa11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 ZNF91Q05481 1191 aa11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 EBPQ15125 230 aaKnown RBP11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 FCRLBQ6BAA4 426 aa11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 SLC27A4Q6P1M0 643 aa11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 FAM199XQ6PEV8 388 aaPredicted RBP11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 SLITRK4Q8IW52 837 aa11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 OR8J1Q8NGP2 316 aa11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 SUN5Q8TC36 379 aa11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 NR4A3Q92570 626 aa11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 FGF11Q92914 225 aa11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 MYDGFQ969H8 173 aa11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 TMEM27Q9HBJ8 222 aa11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.71□□□□□ -0.53
VIPAS39-206ENST00000553888 TEX51A0A1B0GUA7 166 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 EFCAB7A8K855 629 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms