RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 GOLGA8RI6L899 631 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 PDPK1O15530 556 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 KCNK2O95069 426 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 ALOX5P09917 674 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 ATP6V1C1P21283 382 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 PRIM2P49643 509 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 HTR6P50406 440 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 SUMO3P55854 103 aaPredicted RBP14.95□□□□□ -0.02
VPS29-204ENST00000548259 RAC3P60763 192 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 RUNX1T1Q06455 604 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 C2orf54Q08AI8 447 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 RASGEF1BQ0VAM2 473 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 UNC50Q53HI1 259 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 FAM120AOSQ5T036 256 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 ZCCHC12Q6PEW1 402 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 ATP6V1C2Q8NEY4 427 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 NUP43Q8NFH3 380 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 PHOSPHO1Q8TCT1 267 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 MS4A4EQ96PG1 132 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 EMC3Q9P0I2 261 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 FKBP7Q9Y680 259 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 PRR14LQ5THK1 2151 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 CIB4A0PJX0 185 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 E7EQL1 145 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 NDUFS8O00217 210 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 COX5AP20674 150 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 IMPDH1P20839 514 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 ENPP1P22413 925 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 SHC1P29353 583 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 SELENBP1Q13228 472 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 ZNF551Q7Z340 670 aaPredicted RBP14.94□□□□□ -0.02
VPS29-204ENST00000548259 GALNT5Q7Z7M9 940 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 LCA5Q86VQ0 697 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 FBXO27Q8NI29 283 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 HOXB13Q92826 284 aaPredicted RBP14.94□□□□□ -0.02
VPS29-204ENST00000548259 PAFAH2Q99487 392 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 PIMREGQ9BSJ6 248 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 HOXD1Q9GZZ0 328 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 TSPYL1Q9H0U9 437 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 FKRPQ9H9S5 495 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 PRSS50Q9UI38 385 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 TIMM22Q9Y584 194 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 ACTL7BQ9Y614 415 aa14.94□□□□□ -0.02
VPS29-204ENST00000548259 CCT8L1PA6NM43 557 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 ZNF724A8MTY0 619 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 H3BQF6 201 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 GTPBP1O00178 669 aaKnown RBP14.93□□□□□ -0.02
VPS29-204ENST00000548259 KIAA0513O60268 411 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 CRCPO75575 148 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 PGM3O95394 542 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 DDX5P17844 614 aaKnown RBP14.93□□□□□ -0.02
VPS29-204ENST00000548259 ATP5F1P24539 256 aaPredicted RBP14.93□□□□□ -0.02
VPS29-204ENST00000548259 IGFBP5P24593 272 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 MAP3K8P41279 467 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 PDLIM4P50479 330 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 P2RX1P51575 399 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 PRSS53Q2L4Q9 553 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 UBE2J2Q8N2K1 259 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 ARIH2OSQ8N7S6 290 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.93□□□□□ -0.02
VPS29-204ENST00000548259 JADE3Q92613 823 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 CHMP6Q96FZ7 201 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 MRGPRX4Q96LA9 322 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 TMEM237Q96Q45 408 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 PSD2Q9BQI7 771 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 INPP5KQ9BT40 448 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 RRAGDQ9NQL2 400 aaPredicted RBP14.93□□□□□ -0.02
VPS29-204ENST00000548259 NPAP1Q9NZP6 1156 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 ZNF180Q9UJW8 692 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 POLR3HQ9Y535 204 aaPredicted RBP14.93□□□□□ -0.02
VPS29-204ENST00000548259 CADP27708 2225 aa14.93□□□□□ -0.02
VPS29-204ENST00000548259 IGHV3-15A0A0B4J1V0 119 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 ESYT3A0FGR9 886 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 TRIM49D1C9J1S8 452 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 SNRPAP09012 282 aaKnown RBP14.92□□□□□ -0.02
VPS29-204ENST00000548259 APEHP13798 732 aaKnown RBP14.92□□□□□ -0.02
VPS29-204ENST00000548259 IGHV1-2P23083 117 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 CD40P25942 277 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 ZNF83P51522 516 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 POU6F2P78424 691 aaPredicted RBP14.92□□□□□ -0.02
VPS29-204ENST00000548259 CHRNEQ04844 493 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 GGTLC2Q14390 218 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 CD226Q15762 336 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 OR7E24Q6IFN5 339 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 NOXRED1Q6NXP6 359 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 RFLNBQ8N5W9 214 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 SLC16A11Q8NCK7 471 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 ZNF540Q8NDQ6 660 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 FBXO30Q8TB52 745 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 HTRA1Q92743 480 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 ZNF764Q96H86 408 aaPredicted RBP14.92□□□□□ -0.02
VPS29-204ENST00000548259 METTL2AQ96IZ6 378 aaKnown RBP14.92□□□□□ -0.02
VPS29-204ENST00000548259 TRMOQ9BU70 441 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 BTBD2Q9BX70 525 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 CXorf36Q9H7Y0 433 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 NINJ2Q9NZG7 142 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 NTMQ9P121 344 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 ATP23Q9Y6H3 246 aa14.92□□□□□ -0.02
VPS29-204ENST00000548259 POC1B-GALNT4F8VUJ3 575 aa14.91□□□□□ -0.02
VPS29-204ENST00000548259 TCF21O43680 179 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms