RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 MS4A3Q96HJ5 214 aa13.97□□□□□ -0.17
USP28-214ENST00000545540 SDF2Q99470 211 aa13.97□□□□□ -0.17
USP28-214ENST00000545540 NUDT15Q9NV35 164 aa13.97□□□□□ -0.17
USP28-214ENST00000545540 NPAP1Q9NZP6 1156 aa13.97□□□□□ -0.17
USP28-214ENST00000545540 THAP10Q9P2Z0 257 aaPredicted RBP13.97□□□□□ -0.17
USP28-214ENST00000545540 ZNF222Q9UK12 451 aa13.97□□□□□ -0.17
USP28-214ENST00000545540 NUP210Q8TEM1 1887 aaPredicted RBP13.97□□□□□ -0.17
USP28-214ENST00000545540 RASGRP1O95267 797 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 PTHLHP12272 177 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 SNRPBP14678 240 aaKnown RBP13.96□□□□□ -0.17
USP28-214ENST00000545540 CCR6P51684 374 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 ERVK-21P61565 698 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 MLC1Q15049 377 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 OR1Q1Q15612 314 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 NRROSQ86YC3 692 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 LRRC25Q8N386 305 aaPredicted RBP13.96□□□□□ -0.17
USP28-214ENST00000545540 OR5W2Q8NH69 310 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 SRMSQ9H3Y6 488 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 CT62P0C5K7 136 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 BMP7P18075 431 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 DRD5P21918 477 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 CMPK1P30085 196 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 GDI1P31150 447 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 HSD17B2P37059 387 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 TMEM35AQ53FP2 167 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 LRRC17Q8N6Y2 441 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 FAM181AQ8N9Y4 354 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 PRSS27Q9BQR3 290 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 THAP7Q9BT49 309 aaPredicted RBP13.96□□□□□ -0.17
USP28-214ENST00000545540 BABAM2Q9NXR7 383 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 PRKAG2Q9UGJ0 569 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 TEKT2Q9UIF3 430 aa13.96□□□□□ -0.17
USP28-214ENST00000545540 IDSB3KWA1 339 aa13.96□□□□□ -0.18
USP28-214ENST00000545540 TOXO94900 526 aa13.96□□□□□ -0.18
USP28-214ENST00000545540 LAMP2P13473 410 aa13.96□□□□□ -0.18
USP28-214ENST00000545540 FPR3P25089 353 aa13.96□□□□□ -0.18
USP28-214ENST00000545540 HTR1FP30939 366 aa13.96□□□□□ -0.18
USP28-214ENST00000545540 FGF9P31371 208 aaPredicted RBP13.96□□□□□ -0.18
USP28-214ENST00000545540 GABRA3P34903 492 aa13.96□□□□□ -0.18
USP28-214ENST00000545540 PSMB10P40306 273 aa13.96□□□□□ -0.18
USP28-214ENST00000545540 ERV3-1Q14264 604 aa13.96□□□□□ -0.18
USP28-214ENST00000545540 GNA13Q14344 377 aa13.96□□□□□ -0.18
USP28-214ENST00000545540 FCN2Q15485 313 aa13.96□□□□□ -0.18
USP28-214ENST00000545540 PRPF38BQ5VTL8 546 aaKnown RBP13.96□□□□□ -0.18
USP28-214ENST00000545540 SERPINA12Q8IW75 414 aa13.96□□□□□ -0.18
USP28-214ENST00000545540 NATD1Q8N6N6 113 aa13.96□□□□□ -0.18
USP28-214ENST00000545540 OR4K13Q8NH42 304 aa13.96□□□□□ -0.18
USP28-214ENST00000545540 DNAJA4Q8WW22 397 aaPredicted RBP13.96□□□□□ -0.18
USP28-214ENST00000545540 TNFRSF13CQ96RJ3 184 aa13.96□□□□□ -0.18
USP28-214ENST00000545540 CLDND1Q9NY35 253 aa13.96□□□□□ -0.18
USP28-214ENST00000545540 UNC119BA6NIH7 251 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 FGF17O60258 216 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 RNGTTO60942 597 aaKnown RBP13.95□□□□□ -0.18
USP28-214ENST00000545540 RPS5P46782 204 aaKnown RBP13.95□□□□□ -0.18
USP28-214ENST00000545540 SHC2P98077 582 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 YIF1BQ5BJH7 314 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 DGAT2L6Q6ZPD8 337 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 SDR9C7Q8NEX9 313 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 OR1E3Q8WZA6 343 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 C10orf90Q96M02 699 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 CD180Q99467 661 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 GDF15Q99988 308 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 APOOQ9BUR5 198 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 SLC28A3Q9HAS3 691 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 CDH10Q9Y6N8 788 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 FABP7O15540 132 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 CHST10O43529 356 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 SCO2O43819 266 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 PRICKLE3O43900 615 aaPredicted RBP13.95□□□□□ -0.18
USP28-214ENST00000545540 ANXA11P50995 505 aaKnown RBP13.95□□□□□ -0.18
USP28-214ENST00000545540 HYAL4Q2M3T9 481 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 PRRT3Q5FWE3 981 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 TMEM240Q5SV17 173 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 SLC25A30Q5SVS4 291 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 MZT2BQ6NZ67 158 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 CD200R1LQ6Q8B3 271 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 COX18Q8N8Q8 333 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 OR4K14Q8NGD5 310 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 TMEM239Q8WW34 195 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 CNOT9Q92600 299 aaKnown RBP13.95□□□□□ -0.18
USP28-214ENST00000545540 MEPEQ9NQ76 525 aaPredicted RBP13.95□□□□□ -0.18
USP28-214ENST00000545540 A0A0A6YYJ9 748 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 CDHR4A6H8M9 788 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 SLC9B1P1A6NJY1 282 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 OR2B3O76000 313 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 SOX30O94993 753 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 HNRNPA1P09651 372 aaKnown RBP eCLIP13.95□□□□□ -0.18
USP28-214ENST00000545540 NIPAL3Q6P499 406 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 TMEM64Q6YI46 380 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.95□□□□□ -0.18
USP28-214ENST00000545540 FGF14Q92915 247 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 TEAD3Q99594 435 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 COQ3Q9NZJ6 369 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 SLC23A1Q9UHI7 598 aa13.95□□□□□ -0.18
USP28-214ENST00000545540 AK6Q9Y3D8 172 aaKnown RBP13.95□□□□□ -0.18
USP28-214ENST00000545540 OR6C74A6NCV1 312 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 HRKO00198 91 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 STAT5AP42229 794 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 CLDN12P56749 244 aa13.94□□□□□ -0.18
USP28-214ENST00000545540 FOXK2Q01167 660 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms