RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 ZNF549Q6P9A3 640 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 SLC22A25Q6T423 547 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 CES3Q6UWW8 571 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 Q6ZSN1 163 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 Q6ZSR9 355 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 BHLHA15Q7RTS1 189 aaPredicted RBP3.59□□□□□ -1.83
SNHG1-220ENST00000544550 GPR180Q86V85 440 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 TDRPQ86YL5 185 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 PRR22Q8IZ63 422 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 GABRG1Q8N1C3 465 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 ZNF619Q8N2I2 560 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 FITM2Q8N6M3 262 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 OR52B6Q8NGF0 335 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 HTRA1Q92743 480 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 UBE2E3Q969T4 207 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 NMD3Q96D46 503 aaKnown RBP3.59□□□□□ -1.83
SNHG1-220ENST00000544550 MTBPQ96DY7 904 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 OMA1Q96E52 524 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 PTCD3Q96EY7 689 aaKnown RBP3.59□□□□□ -1.83
SNHG1-220ENST00000544550 EGFL8Q99944 293 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 PKP2Q99959 881 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 INPP5KQ9BT40 448 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 FAM167BQ9BTA0 163 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 LRRC1Q9BTT6 524 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 BPESC1Q9GZL8 116 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 DDX47Q9H0S4 455 aaKnown RBP3.59□□□□□ -1.83
SNHG1-220ENST00000544550 SLITRK2Q9H156 845 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 MMP27Q9H306 513 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 ZCCHC4Q9H5U6 513 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 NHEJ1Q9H9Q4 299 aaPredicted RBP3.59□□□□□ -1.83
SNHG1-220ENST00000544550 SMURF2Q9HAU4 748 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 NTN4Q9HB63 628 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 SDHAF3Q9NRP4 125 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.59□□□□□ -1.83
SNHG1-220ENST00000544550 DDX28Q9NUL7 540 aaKnown RBP3.59□□□□□ -1.83
SNHG1-220ENST00000544550 SYBUQ9NX95 663 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 PRODH2Q9UF12 536 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 TAGLN3Q9UI15 199 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 CLEC4AQ9UMR7 237 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 SLC45A2Q9UMX9 530 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 ZNF337Q9Y3M9 751 aa3.59□□□□□ -1.83
SNHG1-220ENST00000544550 USF3Q68DE3 2245 aa3.59□□□□□ -1.84
SNHG1-220ENST00000544550 KIAA1549Q9HCM3 1950 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 OR2M5A3KFT3 312 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 E7EQL1 145 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 H0YC42 278 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 TO15178 435 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 ABHD16AO95870 558 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 TBX6O95947 436 aaPredicted RBP3.58□□□□□ -1.84
SNHG1-220ENST00000544550 ADAP00813 363 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 TACSTD2P09758 323 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 NR2F6P10588 404 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 DDX5P17844 614 aaKnown RBP3.58□□□□□ -1.84
SNHG1-220ENST00000544550 HOXA5P20719 270 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 PTNP21246 168 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 TCEA1P23193 301 aaKnown RBP3.58□□□□□ -1.84
SNHG1-220ENST00000544550 CNTFP26441 200 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 PIK3R1P27986 724 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 IL12BP29460 328 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 APOBEC3AP31941 199 aaPredicted RBP3.58□□□□□ -1.84
SNHG1-220ENST00000544550 SLC1A2P43004 574 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 RAP1GDS1P52306 607 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 TPD52P55327 224 aaPredicted RBP3.58□□□□□ -1.84
SNHG1-220ENST00000544550 CLDN20P56880 219 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 SNRPD2P62316 118 aaKnown RBP3.58□□□□□ -1.84
SNHG1-220ENST00000544550 BASP1P80723 227 aaKnown RBP3.58□□□□□ -1.84
SNHG1-220ENST00000544550 HABP2Q14520 560 aaPredicted RBP3.58□□□□□ -1.84
SNHG1-220ENST00000544550 MORF4L2Q15014 288 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 RNPS1Q15287 305 aaKnown RBP3.58□□□□□ -1.84
SNHG1-220ENST00000544550 ZSWIM7Q19AV6 140 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 OR4C11Q6IEV9 310 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 OR52E8Q6IFG1 317 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 TFAP2EQ6VUC0 442 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 Q6ZT83 130 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 FRA10AC1Q70Z53 315 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 DENND6AQ8IWF6 608 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 TCAIMQ8N3R3 496 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 ZCCHC7Q8N3Z6 543 aaKnown RBP3.58□□□□□ -1.84
SNHG1-220ENST00000544550 SVOPLQ8N434 492 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 SPATA6LQ8N4H0 392 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 RNF10Q8N5U6 811 aaKnown RBP3.58□□□□□ -1.84
SNHG1-220ENST00000544550 OR2C3Q8N628 320 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 UBL4BQ8N7F7 174 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 ZNF615Q8N8J6 731 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 FADS6Q8N9I5 356 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 TOR1AIP2Q8NFQ8 470 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 NXNL1Q96CM4 212 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 REXO5Q96IC2 774 aaKnown RBP3.58□□□□□ -1.84
SNHG1-220ENST00000544550 FOXN4Q96NZ1 517 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 COL21A1Q96P44 957 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 SERPINB12Q96P63 405 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 F2RL3Q96RI0 385 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 HBEGFQ99075 208 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 EFCAB11Q9BUY7 163 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 MS4A8Q9BY19 250 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 NXF5Q9H1B4 397 aaKnown RBP3.58□□□□□ -1.84
SNHG1-220ENST00000544550 CDC42EP4Q9H3Q1 356 aaKnown RBP3.58□□□□□ -1.84
SNHG1-220ENST00000544550 TMPRSS5Q9H3S3 457 aa3.58□□□□□ -1.84
SNHG1-220ENST00000544550 CNOT10Q9H9A5 744 aaKnown RBP3.58□□□□□ -1.84
SNHG1-220ENST00000544550 UNKLQ9H9P5 680 aaKnown RBP3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms